Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g01467 ATGAACTCCGATGGCCGTAAATGGGACCGGAAAGACAACCGAATTTCCAAGAAACAGAAACTAATCAACACCGCCGAAGAAGAACTCGAAGCAAAACTAGGGTTTGATATTTTCTCAGAAGGTGAAAAACGACTTGGATGGTTACTCACTTTTTCATCTTCTTCGTATGAGGATGAGGATACCCGCAAAGCCTATAGTTGTGTTGATCTTTACTTTGTCACACAGGATGGGTCCTCATTCAAGACAAAATACAGATTTCGTCCCTATTTCTATGTAGCTACAAAGAATAAAATGGAGATGGATGTTGACGCATACCTGAGACGACGTTATGAAAGCCAGATTGCAGATATTAAAATTGTAGAAAAGGAAGACCTGGATCTTAAAAACCATTTGTCTGGATTGAGAAAATCTTATTTAAAGCTTTCATTTGATACCGTGCAACAACTGATGAATGTGAGGAATGACCTGATGCATGTTGTTGAAAGAAACAAGGCGAAGTCTGATGCTGCAGAAGCCTATGAGTCCATATTAACGGGGAGAAGAGAACAAAAACTTCAAGACTTTCTAGATTGCATAATTGATCTTCGTGAATATGATGTTCCTTACCATGTTCGCTTTGCTATCGACAACGATATACGGTGTGGTCTGTGGTATGATGTTGGTGTGTCCAATGATGGGGTTACACTTGAGAGGAGGACAGATCTTCTGCAGCGTGCTGAAGTTCGTGTTTGCGCATTTGATATTGAAACCACAAAACTTCCATTGAAGTTTCCTGATGCTGACTATGACTCAATTATGATGATTTCATATATGTGTGTTGGGGATGATATAGAGGATTTAGAGTTCACTCCGAAACCAGAGTTTGAAGGGTGTTTCAAGGTGACAAATGTTCAAAATGAGATTGAGCTTCTTAGATTGTGGTTTTCTCATATGCAAGAGGTGAAACCTGGCATCTATGTGACTTATAATGGTGATTTCTTTGACTGGCCATTTCTGGAACGACGGGCAGCCCATCACGGGTTCAAAATGAGTGATGAACTGGGGTTTCAATGTGACATGAATCAAGGGGAATGTCGTGCTAAATTTGCTCCCCATTTAGATTGTTTTGCATGGGTTAAACGTGACAGTTATCTTCCTCAGGGGAGCCAAGGCCTCAAGGCTGTAACAAAAGCCAAGTTAGGTTATGATCCAGAGGAGGTGAACCCTGAGGACATGGTACGCTTTGCAAAGGAAAAACCTCAGATGATGGCTTCCTATTCTGTTTCTGATGCAGTGTCAACATATTACCTATATACAACTTATGTTCATCCCTTTATTTTCTCTCTTGCCACTATCATACCCATGTCACCAGATGAGGTTTTGCGCAAAGGCAGTGGGACCCTCTGTGAAATGTTGCTTATGGTTCAGTCATACAAGGCTAATGTTATCTGCCCTAACAAGCACCAATCTGATGCGGAGAAGTTTTATAAGAATCATCTTCTTGAGAGTGAGACGTACATAGGTGGCCATGTTGAATGCCTAGAAAGTGGTGTATTTAGATCTGATATTCCATGTAGTTTTACACTCGAGCCATCTGCCTTTGAGCAATTGATCAACAACCTTGATCGAGACCTACAATATGCTATAAGAGTAGAGGGTAAGATGGATTTGGATTCTGTCTCAAATTATGATGAAGTGAAGAATTCTATCATGGAAAAGCTTGTAAAATTACGAGATGCACCGATACGTGACGAATGCCCACTCATTTATCATTTGGATGTAGCCGCAATGTATCCAAATATAATTTTAACAAACCGACTTCAGCCTCCATCAATTGTTACAGATGAGATTTGCACTGCATGTGACTTTAACCGTCCAGGAAAGACTTGTCTACGCAAGCTTGAGTGGGTTTGGCGTGGATCAACATTCACGGCAAAGAAAAGTGACTATTATCATCTAAAGAAGCAAATTGAGTCAGAGTTTGTTGATGGGACAAATGAAAGGTCATCAAAATCTTTTCTTGACCTGCCCAAGGCCGAGCAACAAACAAGACTAAAAGAACGTTTAAAGAAATACTGCCAAAAGGCATATAAACGGGTACTTGACAAGCCAGTTACCGAGCTCCGTGAAGCTGGAATCTGCATGCGCGAAAATCCATTTTATGTTGACACTGTTCGCAGTTTCCGGGATAGGAGGTATGAATATAAAGGCCTTAACAAGGTTTGGAAGGGAAAACTATCAGAGGCCAAAGCCAGTGGAAATTCTATGAAGATCCAAGAAGCACAAGACATGGTAGTGCTTTATGATTCGTTGCAACTTGCTCACAAATGTATTCTTAATTCCTTTTATGGATACGTAATGCGCAAGGGTGCAAGATGGTACTCTATGGAAATGGCTGGTGTTGTCACATATACTGGTGCAAAAATAATTCAAAATGCTCGCTTGCTGGTAGAGAAAATAGGAAAACCACTTGAACTTGACACCGATGGTATCTGGTGTGCACTTCCTGGATCGTTTCCAGAAAATTTCACTTTTAAAACAATAGACTCTAAAAGGAAGTTGACAATCTCATACCCTTGTGTTATGCTTAATGTTGACGTGGCAATAAATAATACAAATGATCAGTACCAGACACTCACAGATCCAAATAGGAAAACTTATACAACTCATAGTGAATGCTCTATTGAATTTGAGGTGGATGGACCATACAAGGCAATGATCATACCTGCTTCGAAGGAGGAAGGAATTTTAATTAAGAAGCGATATGCTGTTTTTAATGATGATGGATCCCTTGCGGAGCTGAAAGGTTTTGAGATCAAGCGCAGAGGTGAACTGAAGCTAATTAAAGTTTTCCAGGCTGAGCTTTTTGAGAACTTTCTCCATGGCTCAACCTTAAAGGAATGCTATTCAGAAGTTGCTTTTGTGGCAAATCGCTGGCTCGATCTTCTTGATAACCAAGGAAAGGATATTGCAGATAGTGAGTTGCTTGATTATATATCAGAATCAAGTACCATGAGCAAGTCTTTAGCTGATTATGGTCAGCAGAAGTCTTGTGCTGTTACCACTGCTAAACGTCTTGCTGATTTTCTTGGTGATACAATGGTCAAAGATAAAGGTCTTCGATGTCAGTACATAGTAGCAAGTGAACCTAAGGGAACACCTGTAAGTGAGCGTGCTGTTCCTGTGGCAATATTTCAAACTGATGCTGAAGTAATGAAGTTCTATGTCCGAAAATGGTGCAAGGTCTCATCAGATGTTGGCATTCGCTCTATAATTGATTGGTCCTATTACAAGCAGCGGCTTGGTTCTGCAATTCAAAAAATTATAACTATTCCTGCTGCAATGCAAAAGGTTGCAAATCCTGTCCCTAGGGTTGTTCATCCTGATTGGTTGCATAAGAAGGTCCGTGAGAAGGAGGACAAGTTTCGCCAAAGAAAAATAGATGATACCTTTAAGTCAATGAACAAGAATGAGAGCTCAAAAAAGCATAATGATTCTAATGGCATGGAGGATGGGATTGTTAATGACATGGAGGACTTTGGAAACAGGAGCAGGGGTTCTACATCCGGACCTAGACCAATTATACGGCATTACAAAGCTAACCATGAACAACATTCAGAGAAATTCAGTGGCCAAGAAGATTCGGAGCAGCATATTGACAGTAGCAACATAGATCAGTCACTTTCACTGTCACAACAAGATGAAATATGCGAAAATGTTGATAGAAATGTAGATTATCAAGGATGGCTTCAAATAAAAAAGAGAAAGTGGAAAAGTATGCTGGGAAAGAGAAAGAAGCAAAGATTGGATAATTCAAAGAGATCTGATCATTTAAATGGCAGTCTTGAACAAACAAATGGTAAGATGAATCACGGCAAAACTAATGTCAGTTCATATTTTAGAAGGAACGAGGTAGTCCTTACACGGTGCCACTGGCAGATAATACAGCTAGTCCACAGTTCACAAGTTGGCCAATTTTTTGCTTGGGTTGTTGTTGATGGGATTATGCTCAAGATTCCTATTTCTGTTCCTAGAGTCTTTTACCTTAACTCTAGATCACAAAATGAAGAGTGTTCGGGCAAACGTGTCAACAAGACTCTTCCTCATGGAAGACATAGTTATAACCTGTATGAGGTCACAATTAATGAAGAACAATATAAAGAAGAAAGCAAAAAACTTGCCGCTCTTCTAGCAGATCCTGATGTTGAGGGAATATATGAAACCAAGGTGCCACTGGATTTCAACGCTATAGTCCAGCTTGGTTGTGTTTGTAAGGTGGATAAAACTGCTAAAAAACGTAGCCTACAAGAGCCATGGAATTTGAGTGAATTGCACATGAAGACCACAACAGAATGTGCATATCTTGAACAATCAATATCTTTTTTTTACTTATACCAGAGCATCTCAGAGGGACGAGCTGTATATGTTGGATATTTTCCTGGGTCACAAGCAATAACTTTTGTGGTAGTTAATCCCTACCAAAACAAGGACTTATCACCAATTTTTCTCGAAAGACAATTTCGTGATGCTTGCAGAGCTTTGTCTATTGAGCCACCTCTGCGGAATGACATTAATTTTAAGGTGGAATATGTTGCACTTGTCAAGGATGCTGAAACAGTAATGCAAAGCACAATAAATGATCACAGGAGTGAACATCATGGGCCTATGGTTGCTGTCATCGAATGCCCAGATGTTCAACGATTAAAACTAGGCATTCGAGCTTTAGATGATTTTCCATGCCTGAGTATTCCTTCTAACGCACGTGATAGTCAATACCAGATACTTGGATGGCAACAAGTTGCTGCTAAACTTGGAATGCAACGTTGTGCGGCATCGGTCCAATGGCTAAATGAGAGAATTGCTCTATCCAGATATGCCCATGTACCACTGGGGAACTTTGAATTTGACTGGCTTATGTTTACAGTGGATACCTTCTTTTCTAGAGCATTGCGTGATAATCAACAGGTGCTTTGGATATCTGATGATGGTTTTCCAGATTTGGGTGGCAACAATGGTGAAGAAAACTGTTTTTTAGATGAGGTGCACCAATCTGTTTGTACGTTTCCTGGAGCTTATAGAAAAGTTACTGTGGAGCTAAAGATACACAACCTGGCTGTAGATGCCCTTTTAAAATGCAACCAAGTTAATGAAATGGAAGGAGGTGCTTTGTTAGGATTGGATCATGAATTTGATTCTGAAGCATTTCCTGTGAATGGTCAGAATGGCTTTGATGAGTCTACTTCATGCACACATGCCTTTCGAGTCCTAAAACATTTGATCCAGCGGTGCCTTTCAGATGCAGTCGCATCTGGAAATGTTTATGCTGATGCAATATTGCAACATCTGTATAGATGGCTTTGCAGCCCTCAATCAAAACTTCATGATCCCGCTCTTCACCAGTTACTCCACAAGGTCATGCAAAAGGTCTTCGCGTTGTTGTTGGCAGAGTTCCGCAAGTTGGGTGCAACAATTGTTTTTGCAAACTTCTCGAAGATTATTATAGACACGGGAAAATATGATTTGTCTACAGCCAAAGCATACTGTGATAGTTTGTTAAGAACTATACAATCTAGAGACCTATTCGAGTGGATTGAGCTTGAACCACTGCAGTTTTGGTGCTCATTGCTATTCATGGACCAGTATAACTATGGTGGAATACCAGCAAAGTCTGATGAAGCCATGGATGATGAGTCTCCAGTTGACATAATATCAAGTTGGAATATTGCCGAGTACTTGCCAAAAAAAATCCAAGACCATTATGTTTTCATGGTTTCTCAATTCATGTATATTCCTTGGAACTATGCACGAAAACAAGCAGCGATCAGGGCTTCGGTGCTGAGTGGAGACTCCAGCACCCCATCAATTAATATTGGAGCTGCAGAGGCTTTTGAATCAGAAATAACTGAATATATTAAAGAACAGATTAGCTCTTACTTCACTGACAAACTCCTTGGAGTTGTTCGTGATATTGTTCTTCATATGAAGGGGATGGGCAGATCAGAAAACGATCTGAGTACATCATCCGGCCTTCCTCAACTGGCGGGTGATCTCCATAGAGGGGATGCAGCCTTGGAGTTTATCAAACATGTCTGTGCCGTCCTTGCCCTCGACCAAAGTGTGCAGCATGATGTTCATGTCATGAGAAAAAATTTGTTAAAATATGTTCGTGTCAGGGAGTTTGCTCCAGAAGCAGAGTTTCATGATCCTTGTCATTCCTTCACATTACCCAATGTTATCTGCAACTATTGTAATGATTGCAGAGATTTGGACTTGTGCCGTGATCCGACTTTATTGACCGAAGAGTGGCATTGTGGCCAACCTCAGTGTGGCCAGCCTTATGACCGTGAGGTGATGGAGAATGCTCTTCTTCAGATTGCACGACAAAGGGAGCGGCAATACCACTTGCAAGATCTCGTGTGTGTCAGGTGCAACCAGGTGAAAGCTGCACATTTGGCTGAGCAATGTGCATGTGCAGGCTCATTTAAGTGCAAGGAAGATGCAACAGAATTTCGCAAAAAGATGCAGGTTATCTTCAACATAGCTTCTCGTCAGAAATTCCAACTTCTTCAAGAATGTACCTCCTGGATGTTAGAACTCCAAATTTGA 6585 0.4073 MNSDGRKWDRKDNRISKKQKLINTAEEELEAKLGFDIFSEGEKRLGWLLTFSSSSYEDEDTRKAYSCVDLYFVTQDGSSFKTKYRFRPYFYVATKNKMEMDVDAYLRRRYESQIADIKIVEKEDLDLKNHLSGLRKSYLKLSFDTVQQLMNVRNDLMHVVERNKAKSDAAEAYESILTGRREQKLQDFLDCIIDLREYDVPYHVRFAIDNDIRCGLWYDVGVSNDGVTLERRTDLLQRAEVRVCAFDIETTKLPLKFPDADYDSIMMISYMCVGDDIEDLEFTPKPEFEGCFKVTNVQNEIELLRLWFSHMQEVKPGIYVTYNGDFFDWPFLERRAAHHGFKMSDELGFQCDMNQGECRAKFAPHLDCFAWVKRDSYLPQGSQGLKAVTKAKLGYDPEEVNPEDMVRFAKEKPQMMASYSVSDAVSTYYLYTTYVHPFIFSLATIIPMSPDEVLRKGSGTLCEMLLMVQSYKANVICPNKHQSDAEKFYKNHLLESETYIGGHVECLESGVFRSDIPCSFTLEPSAFEQLINNLDRDLQYAIRVEGKMDLDSVSNYDEVKNSIMEKLVKLRDAPIRDECPLIYHLDVAAMYPNIILTNRLQPPSIVTDEICTACDFNRPGKTCLRKLEWVWRGSTFTAKKSDYYHLKKQIESEFVDGTNERSSKSFLDLPKAEQQTRLKERLKKYCQKAYKRVLDKPVTELREAGICMRENPFYVDTVRSFRDRRYEYKGLNKVWKGKLSEAKASGNSMKIQEAQDMVVLYDSLQLAHKCILNSFYGYVMRKGARWYSMEMAGVVTYTGAKIIQNARLLVEKIGKPLELDTDGIWCALPGSFPENFTFKTIDSKRKLTISYPCVMLNVDVAINNTNDQYQTLTDPNRKTYTTHSECSIEFEVDGPYKAMIIPASKEEGILIKKRYAVFNDDGSLAELKGFEIKRRGELKLIKVFQAELFENFLHGSTLKECYSEVAFVANRWLDLLDNQGKDIADSELLDYISESSTMSKSLADYGQQKSCAVTTAKRLADFLGDTMVKDKGLRCQYIVASEPKGTPVSERAVPVAIFQTDAEVMKFYVRKWCKVSSDVGIRSIIDWSYYKQRLGSAIQKIITIPAAMQKVANPVPRVVHPDWLHKKVREKEDKFRQRKIDDTFKSMNKNESSKKHNDSNGMEDGIVNDMEDFGNRSRGSTSGPRPIIRHYKANHEQHSEKFSGQEDSEQHIDSSNIDQSLSLSQQDEICENVDRNVDYQGWLQIKKRKWKSMLGKRKKQRLDNSKRSDHLNGSLEQTNGKMNHGKTNVSSYFRRNEVVLTRCHWQIIQLVHSSQVGQFFAWVVVDGIMLKIPISVPRVFYLNSRSQNEECSGKRVNKTLPHGRHSYNLYEVTINEEQYKEESKKLAALLADPDVEGIYETKVPLDFNAIVQLGCVCKVDKTAKKRSLQEPWNLSELHMKTTTECAYLEQSISFFYLYQSISEGRAVYVGYFPGSQAITFVVVNPYQNKDLSPIFLERQFRDACRALSIEPPLRNDINFKVEYVALVKDAETVMQSTINDHRSEHHGPMVAVIECPDVQRLKLGIRALDDFPCLSIPSNARDSQYQILGWQQVAAKLGMQRCAASVQWLNERIALSRYAHVPLGNFEFDWLMFTVDTFFSRALRDNQQVLWISDDGFPDLGGNNGEENCFLDEVHQSVCTFPGAYRKVTVELKIHNLAVDALLKCNQVNEMEGGALLGLDHEFDSEAFPVNGQNGFDESTSCTHAFRVLKHLIQRCLSDAVASGNVYADAILQHLYRWLCSPQSKLHDPALHQLLHKVMQKVFALLLAEFRKLGATIVFANFSKIIIDTGKYDLSTAKAYCDSLLRTIQSRDLFEWIELEPLQFWCSLLFMDQYNYGGIPAKSDEAMDDESPVDIISSWNIAEYLPKKIQDHYVFMVSQFMYIPWNYARKQAAIRASVLSGDSSTPSINIGAAEAFESEITEYIKEQISSYFTDKLLGVVRDIVLHMKGMGRSENDLSTSSGLPQLAGDLHRGDAALEFIKHVCAVLALDQSVQHDVHVMRKNLLKYVRVREFAPEAEFHDPCHSFTLPNVICNYCNDCRDLDLCRDPTLLTEEWHCGQPQCGQPYDREVMENALLQIARQRERQYHLQDLVCVRCNQVKAAHLAEQCACAGSFKCKEDATEFRKKMQVIFNIASRQKFQLLQECTSWMLELQI 2194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g01467 2194 SMART DUF1744_2 1495 1879 IPR013697 GO:0003887|GO:0005634|GO:0006260|GO:0008270
Trre7g01467 2194 SMART polmehr3 239 830 IPR006172 GO:0000166|GO:0003676|GO:0003887
Trre7g01467 2194 FunFam DNA polymerase epsilon catalytic subunit 929 1113 - -
Trre7g01467 2194 FunFam DNA polymerase epsilon catalytic subunit 240 456 - -
Trre7g01467 2194 Gene3D - 238 456 IPR036397 GO:0003676
Trre7g01467 2194 Gene3D DNA Polymerase, chain B, domain 1 52 225 - -
Trre7g01467 2194 MobiDBLite consensus disorder prediction 1195 1214 - -
Trre7g01467 2194 MobiDBLite consensus disorder prediction 1136 1162 - -
Trre7g01467 2194 MobiDBLite consensus disorder prediction 1195 1213 - -
Trre7g01467 2194 MobiDBLite consensus disorder prediction 1136 1187 - -
Trre7g01467 2194 Pfam DNA polymerase family B, exonuclease domain 74 388 IPR006133 -
Trre7g01467 2194 Pfam Domain of unknown function (DUF1744) 1513 1879 IPR013697 GO:0003887|GO:0005634|GO:0006260|GO:0008270
Trre7g01467 2194 SUPERFAMILY DNA/RNA polymerases 474 1103 IPR043502 -
Trre7g01467 2194 SUPERFAMILY Ribonuclease H-like 58 455 IPR012337 -
Trre7g01467 2194 Pfam DNA polymerase family B 741 1052 IPR006134 GO:0000166|GO:0003677
Trre7g01467 2194 CDD POLBc_epsilon 491 1110 - -
Trre7g01467 2194 PANTHER DNA POLYMERASE EPSILON CATALYTIC SUBUNIT A 16 2191 IPR029703 GO:0003677|GO:0003887|GO:0006260|GO:0006281|GO:0008622
Trre7g01467 2194 CDD DNA_polB_epsilon_exo 240 431 - -
Trre7g01467 2194 Gene3D Palm domain of DNA polymerase 743 925 IPR023211 -
Trre7g01467 2194 Gene3D - 929 1113 IPR042087 -
Trre7g01467 2194 FunFam DNA polymerase epsilon catalytic subunit 56 227 - -
Trre7g01467 2194 MobiDBLite consensus disorder prediction 1254 1283 - -
Trre7g01467 2194 FunFam DNA polymerase epsilon catalytic subunit 740 925 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g01467 Trre-Chr7 10847054 10873449 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g01467 5 2190 Core DNA Replication Machinery Family AT2G27120 67.424 0.0 3012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g01467 K02324 - gmx:100812003 3760.69