Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g01456 ATGTATAGCAATTTCAAGGAGCAAGGAATAGATTACGCGAAACAAGCTGTACAAGAGGATAATGCAGGAAACTACGCAAAAGCGTTTACTTTATACATGAACGCGTTGGAGTATTTCAAAACGCATCTCAAGTACGAGAAAAACCCTAAAATCAAAGAAACTATTACTCAGAGATTTACTGATTATCTTCGTCGTGCTGAGGAGATCCGTGCTGTGCTTGATGGTGGTGGACCAGGACCTGCTTCTAATGGGGATGCTGCTGTTGCGACGAAACCGAAAACGAAGCCGAAGAGTGGTGGTGGTGGTGGTGAGGGAGATGGAGAGGATCCTGAGCAGAGTAAGTTGAGAGCTGGGTTGAATTCGGCGATTGTGAGGGAGAAACCGAATGTGAAGTGGAATGATGTTGCTGGGTTGGAAAGTGCCAAGCAATCGTTGCAGGAAGCGGTTATCTTGCCTGTGAAGTTTCCTCAGTTTTTTACTGGTAAAAGACGACCTTGGAGGGCGTTTTTGTTGTACGGACCACCTGGAACAGGTAAATCATACTTGGCCAAGGCTGTTGCAACTGAAGCTGATTCCACATTTTTCAGTGTTTCTTCATCGGACCTCGTTTCAAAGTGGATGGGTGAAAGTGAAAAGCTGGTTTCAAACCTTTTTGAAATGGCTCGCGAAAGTGCACCTTCCATCATATTTGTTGATGAAATAGATTCTCTATGTGGTACGCGTGGAGAAGGCAATGAGAGTGAGGCTTCAAGGCGAATTAAAACTGAACTTCTGGTGCAGATGCAGATTTGTTTGTTTTCTGAGTCTTTGATTCCTGGATAA 822 0.444 MYSNFKEQGIDYAKQAVQEDNAGNYAKAFTLYMNALEYFKTHLKYEKNPKIKETITQRFTDYLRRAEEIRAVLDGGGPGPASNGDAAVATKPKTKPKSGGGGGEGDGEDPEQSKLRAGLNSAIVREKPNVKWNDVAGLESAKQSLQEAVILPVKFPQFFTGKRRPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSVSSSDLVSKWMGESEKLVSNLFEMARESAPSIIFVDEIDSLCGTRGEGNESEASRRIKTELLVQMQICLFSESLIPG 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g01456 273 Gene3D - 128 262 IPR027417 -
Trre7g01456 273 FunFam Suppressor of K+ transport growth defect 1 6 75 - -
Trre7g01456 273 Pfam ATPase family associated with various cellular activities (AAA) 170 262 IPR003959 GO:0005524|GO:0016887
Trre7g01456 273 Pfam MIT (microtubule interacting and transport) domain 8 70 IPR007330 -
Trre7g01456 273 PANTHER AAA DOMAIN-CONTAINING 15 262 - -
Trre7g01456 273 Gene3D - 6 74 - -
Trre7g01456 273 SMART smart 2 79 IPR007330 -
Trre7g01456 273 MobiDBLite consensus disorder prediction 73 113 - -
Trre7g01456 273 SMART AAA_5 165 265 IPR003593 GO:0016887
Trre7g01456 273 FunFam Katanin p60 ATPase-containing subunit A-like 2 127 243 - -
Trre7g01456 273 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 123 262 IPR027417 -
Trre7g01456 273 CDD MIT_VPS4 4 74 IPR045253 -
Trre7g01456 273 SUPERFAMILY MIT domain 2 80 IPR036181 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g01456 Trre-Chr7 10704693 10710219 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g01456 112 261 Calmodulin-binding Proteins AT3G56690 44.805 3.44e-32 123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g01456 K12196 - gmx:100806836 464.151