Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g01443 ATGGCCATGATGGAGTTTGATATAGAGGATAATAATTTCATTGAATGGCTTAAACCATCTAGTTCCTCTCTTTCATATCAAACTTCATCATCATCAATATCATCATCTTCTTCTTCTACCACTCAAAATGAAACTATTCAATTCTTTCCTATTTTGAGTGCAAAGTCTTCAAAAGAGGAAGAACATGAAGTACCACAAATTAAGGGTTTTGATGTGGCTTTGCATATTGGATTACCTAGTGACACTAAAGAAAATGATGAGAAGTTTTTCCATGCTAAAGAAGAAGAAAAGCCTTCTAAGAAAACCTTCCAAAGGTTTTGGATACCAACTTCTGCACAAATCCTTGTTGGACCTATGCAGTTTTCTTGCCCCATATGCAACAAAACCTTCAATAGGTATAACAACATGCAGATGCATATGTGGGGGCATGGATCTGAATTTAGGAAAGGAGCAGACTCACTTAGAGGAACACAACCAGCTGCAATGCTAAGGTTACCTTGCTATTGTTGTGCTCAAGGTTGCAAGAACAATATCAATCATCCAAGAGCTAAGCCTTTGAAAGACTTTAGAACACTTCAAACTCACTACAAAAGAAAACATGGGACAAAACCATTTATGTGTAGAAAATGTGGGAAAACTTTTGCTGTTAAAGGTGATTGGAGGACTCATGAAAAGAATTGTGGTAAGTTTTGGTATTGCACTTGTGGTTCAGATTTTAAACACAAAAGATCTCTCAAAGATCATATTAGATCTTTCGGAAAAGGACATAATCGAATTCCGAGTCTTGATGATCGAGCTTTCGAGGAGGATCAGAAGGAATGTGTTACTTGTTTTGATGAAGTTGCTCGGACATGA 855 0.3684 MAMMEFDIEDNNFIEWLKPSSSSLSYQTSSSSISSSSSSTTQNETIQFFPILSAKSSKEEEHEVPQIKGFDVALHIGLPSDTKENDEKFFHAKEEEKPSKKTFQRFWIPTSAQILVGPMQFSCPICNKTFNRYNNMQMHMWGHGSEFRKGADSLRGTQPAAMLRLPCYCCAQGCKNNINHPRAKPLKDFRTLQTHYKRKHGTKPFMCRKCGKTFAVKGDWRTHEKNCGKFWYCTCGSDFKHKRSLKDHIRSFGKGHNRIPSLDDRAFEEDQKECVTCFDEVART 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g01443 284 Pfam Zinc finger, C2H2 type 121 140 IPR013087 -
Trre7g01443 284 FunFam zinc finger protein WIP2-like 120 143 - -
Trre7g01443 284 FunFam Zinc finger protein WIP2 174 256 - -
Trre7g01443 284 Gene3D Classic Zinc Finger 120 143 - -
Trre7g01443 284 SUPERFAMILY beta-beta-alpha zinc fingers 112 144 IPR036236 -
Trre7g01443 284 ProSiteProfiles Zinc finger C2H2 type domain profile. 205 225 IPR013087 -
Trre7g01443 284 SMART c2h2final6 121 143 IPR013087 -
Trre7g01443 284 SMART c2h2final6 205 225 IPR013087 -
Trre7g01443 284 SMART c2h2final6 168 200 IPR013087 -
Trre7g01443 284 Gene3D Classic Zinc Finger 201 261 - -
Trre7g01443 284 ProSiteProfiles Zinc finger C2H2 type domain profile. 121 148 IPR013087 -
Trre7g01443 284 ProSitePatterns Zinc finger C2H2 type domain signature. 123 143 IPR013087 -
Trre7g01443 284 PANTHER ZINC FINGER PROTEIN WIP2 20 270 IPR043584 GO:0003700|GO:0010468
Trre7g01443 284 SUPERFAMILY beta-beta-alpha zinc fingers 191 225 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g01443 Trre-Chr7 10621881 10625810 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g01443 6 276 C2H2 Transcription Factor Family AT1G08290 54.599 5.37e-112 325
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre7g01443 zf-C2H2_6 0.00031 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g01443 - - gmx:100802773 410.994
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g03773 11 51028817 51032250 Trre7g01443 7 10621881 10625810 PCT