LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre7g01430	ATGGCAGAGACAGAGGATCTTCCCAAAACTATCGTACGCCGCGTGGTGAAGGAAAAGCTATCCACTTGCTCCGACGACGGCGACATTGCCGTCCACAAAGACGCTCTTCTCGCATTCTCCGAAAGTGCAAGAATCTTCATCCACTACCTTTCAGCTACGGCTAATGATATATGTAAGGAGTCAAAGAGACAAATTATCAATGCTGAAGATGTTTTCAAAGCTCTTGAAGAAACTGAGTTTACTGAATTTGTTAGGCCTTTAAAAGCTTCTCTTGAAGAGTTTAGGAAGAAGAATGCTGGGAAGAAAGCAGCGGTGTCAAAGGGAAAAGGAGATGAGAAGGGAAATGAGAAGAAAAAGAAAAGAAAGTTGGAAGAAGGTGAGCCATCTGATAAAGGCAATGGTGGTGGTGATGAGTGA	417	0.4341	MAETEDLPKTIVRRVVKEKLSTCSDDGDIAVHKDALLAFSESARIFIHYLSATANDICKESKRQIINAEDVFKALEETEFTEFVRPLKASLEEFRKKNAGKKAAVSKGKGDEKGNEKKKKRKLEEGEPSDKGNGGGDE	138

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre7g01430	138	MobiDBLite	consensus disorder prediction	98	138	-	-
	Trre7g01430	138	Gene3D	Histone, subunit A	1	135	IPR009072	GO:0046982
	Trre7g01430	138	FunFam	DNA polymerase epsilon subunit 3	1	138	-	-
	Trre7g01430	138	PANTHER	DNA POLYMERASE EPSILON SUBUNIT 3	6	130	-	-
	Trre7g01430	138	Pfam	Histone-like transcription factor (CBF/NF-Y) and archaeal histone	7	75	IPR003958	-
	Trre7g01430	138	SUPERFAMILY	Histone-fold	7	118	IPR009072	GO:0046982
	Trre7g01430	138	Coils	Coil	58	78	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre7g01430	Trre-Chr7	10528796	10530256	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre7g01430	7	129	CCAAT-HAP3 Transcription Factor Family	AT3G53340	31.707	2.85e-11	56.6

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	NF-YB	Trre7g01430		CBFD_NFYB_HMF	9.5e-09	CL0012

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre7g01430	K02326		-	gmx:100306382	181.03

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Trre7g01430	7	10528796	10530256	Trre7g01430	7	10528796	10530256	ECH