Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g01428 ATGCCGAAGGGAAAGCCAAATTCTTCACCAGTTGCTAAACAGTCTGAGCCTGAAAAGCCAGTTGAATCTGATGAGAAGGTTGACCTTGAAGAGGGAAATGATCCTGAGGAAGAAATGGAAGAAGAGGTTGAATATGAAGAAGTAGAAGAAGAGGAGGAAGTGGAAGAAATAGAAGAGGAGGTGGAAGAAGAGGAGGATCCGGAGGAGGTAGAGGAAGAAGAAGAGGAAGAGGAGGAGGAAGAGGTCGAAGAAGTGGAAGAAGATGATGCCACGGAAAACCACAGCATTGATGATGAAGAGAAGAAAAAGCATGCTGAACTTCTTTCTCTTCCTCCTCACAAGTCTGAAGTTTACTTAGGTGGCATTCCTCTTGATGCATTAACTGAAGATTTAAAAGAATTTTGTGAGCGTATTGGGGAAGTTGTACAGGTTAGAATAATGAAAGGAAAAGATTCTTCTGAGAATAAGGGATTTGCTTTTGTGACTTATAGAAATGTAGAACTGGCTACTAAAGCCATCGAGGAGCTGAATAATACCGTATTTAAGGGTAGAAAAATAAAATGTTCTACATCTCAAGCCAAAAATCGTCTTTTTATTGGCAATATTCCTAGAAGTTGGGGGGAAAAGGACCTGAAGAAGGTTGTGAATGAGATTGGACCTGGAGTTACTGCTGTTGAACTAGTCAAGGATATGAAGAACATTAGCAATAACCGTGGCTTTGCTTTTATCGATTACCATAATAATGCATGTGCTGAATATTCAAAGCAAAAGATGACGAACCCAACATTTAAGCTTGGTGAAAATTCCCCAACAGTGAGCTGGGCTGACCCTAAAAATGCTGATTCCTCTGCTTCATCTCAGGTAAAGGCAGTATATGTGAAGAACCTTCCTAAGAATGTAACTCAAGAGCAGTTGAAAAAGCTTTTTGAACACCATGGGAAGATCACCAAGGTGGTTCTTCCACCACCAAAGCCTGGTCAGGAAAAGAACAGAATTGGCTTTGTGCATTTTGCAGAGAGATCAAATGCTATGAAAGCACTAAAAAACACCGAAAGATATGAGTTAGAAGTCTTCTGTTTTTGGTAA 1086 0.4033 MPKGKPNSSPVAKQSEPEKPVESDEKVDLEEGNDPEEEMEEEVEYEEVEEEEEVEEIEEEVEEEEDPEEVEEEEEEEEEEEVEEVEEDDATENHSIDDEEKKKHAELLSLPPHKSEVYLGGIPLDALTEDLKEFCERIGEVVQVRIMKGKDSSENKGFAFVTYRNVELATKAIEELNNTVFKGRKIKCSTSQAKNRLFIGNIPRSWGEKDLKKVVNEIGPGVTAVELVKDMKNISNNRGFAFIDYHNNACAEYSKQKMTNPTFKLGENSPTVSWADPKNADSSASSQVKAVYVKNLPKNVTQEQLKKLFEHHGKITKVVLPPPKPGQEKNRIGFVHFAERSNAMKALKNTERYELEVFCFW 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g01428 361 MobiDBLite consensus disorder prediction 1 101 - -
Trre7g01428 361 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 195 277 IPR000504 GO:0003723
Trre7g01428 361 Gene3D - 28 195 IPR012677 -
Trre7g01428 361 MobiDBLite consensus disorder prediction 27 94 - -
Trre7g01428 361 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 196 276 - -
Trre7g01428 361 Gene3D - 196 276 IPR012677 -
Trre7g01428 361 Coils Coil 36 88 - -
Trre7g01428 361 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 117 187 IPR000504 GO:0003723
Trre7g01428 361 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 197 263 IPR000504 GO:0003723
Trre7g01428 361 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 291 355 IPR000504 GO:0003723
Trre7g01428 361 SMART rrm1_1 290 360 IPR000504 GO:0003723
Trre7g01428 361 SMART rrm1_1 196 273 IPR000504 GO:0003723
Trre7g01428 361 SMART rrm1_1 116 189 IPR000504 GO:0003723
Trre7g01428 361 SUPERFAMILY RNA-binding domain, RBD 115 280 IPR035979 GO:0003676
Trre7g01428 361 CDD RRM_SF 117 189 - -
Trre7g01428 361 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 115 193 IPR000504 GO:0003723
Trre7g01428 361 Gene3D - 280 357 IPR012677 -
Trre7g01428 361 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 8 351 - -
Trre7g01428 361 SUPERFAMILY RNA-binding domain, RBD 282 354 IPR035979 GO:0003676
Trre7g01428 361 SMART rrm2_1 116 189 IPR003954 GO:0003676
Trre7g01428 361 FunFam RNA recognition motif-containing protein 21 195 - -
Trre7g01428 361 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 289 361 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g01428 Trre-Chr7 10517966 10522061 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g01428 115 356 Eukaryotic Initiation Factors Gene Family AT4G34110 25.000 3.20e-16 78.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g01428 K13161 - gmx:100785076 484.567