Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g01393 ATGGAATCTAAGATGGATCAGTATGAGATCATGGAACAGATCGGTCGTGGTGCTTTTGGTGCTGCTATTCTTGTTAATCATAAAGCTGAGAAGAAAAAATATGTGTTGAAGAAAATCAGGCTTGCTAGGCAGACTGAGAGATGTAGAAGATCTGCCCATCAAGAGATGGCTCTTATTGCAAGAATCAAGCACCCTTACATTGTGGAATTTAAGGAAGCATGGGTGGAGAAGGGTTGCTATGTCTGCATTGTCACCGGATATTGTGAAGGCGGAGACATGGCTGAAACGATGAAAAAATTAAACGGCACTTACTTTCCCGAGGAGAAACTCTGCAAATGGTTCACTCAATTACTTTTGGCAGTAGAATACCTTCATTCAAATTATGTTTTACATCGCGACTTAAAGTGTTCCAACATCTTTCTTACAAAGGATCAGGATATTCGCCTTGGTGATTTTGGACTTGCTAAGACACTAAAAGCAGATGATTTGGCTTCTTCGGTAGTAGGAACTCCGAATTACATGTGTCCTGAACTGCTTGCAGATATTCCGTATGGATTCAAATCAGATATTTGGTCATTAGGCTGCTGTGTATACGAGATGGCTGCTCATCGCCCTGCCTTTAAAGCATTTGATATGGCAGGACTGATAAGCAAGATAAATCGTTCCTCTATCGGCCCTTTGCCTCCGTGTTATTCCCCTTCATTGAAAATACTAATAAAAGGCATGTTGAGAAAAAGTCCCGAGCATCGACCAACAGCATCTGAAGTTTTGAAGCACCCTTATTTGCAACCGTATGTCGATCAATATCGTCCATCTTTCGCTCCTCAAACAGCCTTTTCTCCCGAAAAACCAATTTCTGCTGTCAATATTACTAAAAGACATATGGCTGAAAGTCAGAACAGTACTAGTTCAAGTAGTGACAAAGATAGTTTAATGTCAAATGACAGAAACATTGCAACAACAGCGCCGAGGTGTGATAGCAAAGCTACAGATATGGATATCGATGATGATGGCTCGGAGAATCTCCAAGAGGTGATAAAATCATCTCATAATGAACAGCATTCTAATGTTGAAACTAAACCGCAGCCAAGAACAATCAAAAATATAATGATGGCATTGAAAGAAGGGAGAGGTAGAGAAGCTACTTCTCCGATGAGAGGTAGAGAAACTACTTCTCCGATGAGAGGCAGTCGTGTAAAGGCTGGTGGAGTATCGACGCCGAAAGTAAATACAGACGTACCATCTAAATTGCCTAAACCGACTTTCATTGCTCCTAGTTTGAAGCCTAATTTAGAGTCTCCGAATGTTCCACTAAAGGCATCTCCTGATTCTTCAAAACGAATATACGGATCGCCTCATTCAAAGCTTCAGTTACTGATGACAGAGCCGTCTCCAAAAGTTAAACCGAAACATGATATGACCCCACCATCTGGTCCTATCAAACAACAAGGAGAAGGAGATGGAGTTCCTCCTAGGCCAAGGCAAAGAACTCCCCCGAGCTTACTTCGACGACCTACTTTTCCAGGACGAATGAGGCTTGCAGGGATTGATGTTCCAAATGCAGCGAACGATAGCGGGAAGCTAGGTCCTAGTAATACAGGCCAGGAATCTGAGATAAGCCACAGTCAGCTGTTCAATGGAAGCGTGCCGCGTATTTCTAGACCGTTTATTAGAGAACCTCAGAATGCTTTTGAAAAAAGTTCTAAAGGAATGCAAACAGACAGTAGTAATTCTGCCTCGTCTTCAGTTTCGATTCAAGGATGTGAACTTGCTGATGATGCAACAACTTTTATTGACATGAGAGAACATAGTCTTCCTGATCATGACAATGTAACAAATGTTGTCGGTGTTGAATCACATCCAGACCGCAGCCCGTCGGTGTCAACAACCTGTTCACATTGTAAGATGGCTGAAGAAGCGTCCGAGGAAACCTGTGAAGTCACCATGAATTTTCAGAGTACTATTAGTAGTAATGAAAAAGTGAGTTCCAATTTAACTGATGAAAATTCTAAGGAAATTTTTGCTTCGGAAGATAGTCATCCGAGAAATCAGACAACTACATCTACTACTTCCGTGTGTGGTAATAGATCTGTTGACCCGCCTGCTGAAGTGGCCGAAGAAATCGAAGATCTTCAAGATATTTCTAAGGAAATGGATTTAACCAAGTCTCTCAAACATCCACCCTCAAATTCTGGAGAAAACTCTGTTTGTGAAGAAGTTGTTGCAGTAAACAAACTCAATAATAGGCCTGAAACTGTCACTGGCGATGACAAATTTACGGTGAAGGAGCGATTGTCGTTGGTCGCTGAAACTGAACCTATAACTACCGTTACTAAAATACCGAGCCAGAAAGTTTCGCAAGAGAAAGGAACTGTCACGCAGAATCCAGCAGCACAAGAAAGGCAAGATACTAGTCATCTACCTGCAGCCTTTGACGATGTCATCCATGTTATTCGCCATAGTAGTTATCGCGTTGGGAGTGATCAGCCGGTAATGGAATCGGTCGAAATGGGAGTTCAGAATGTCGATGTTGGCAAGTTTATCAATGTTATGAGGGACGACATAGAAAAGAGAAACATAAGCTCTCCAATGGCTCTTAAATCTTCGAGTTCCTCTGAATCCGCAAGCTTGAAATCTAATATTTCTGATCAGTTGGAGATGAAAAACACAATTGCAAGTTTCTCCGACGCTACGAGCTTGAAACCGAGCGTTCCAGATCATCCTAGTCTTAAGGAACAAGAAGTGAGCAACACTGTTTCTTCAGTTTCAGAATCTGATTCATCCGAGCTTAGTAAATGCAACACTCCTACAACCGAAGACAAACCGCCGGCGAAGGAAATACTCGACGTGAAATCTTTCAGGCAGAGAGCCGAAGCACTTGAAGAGCTTTTGGAATTGTCTGCAGATTTGTTGCAGCAAAATAGACTGGAGGAACTTCAAGTTGTTCTAAAGCCATTCGGTAAAGATAAGGTCTCTCCACGAGAGACAGCGATTTGGTTAGCAAGAAGTCTTAAGGGAATGATGTCCGAGGAAAATGGAGGACGCTGTTCGTCATGA 3057 0.4226 MESKMDQYEIMEQIGRGAFGAAILVNHKAEKKKYVLKKIRLARQTERCRRSAHQEMALIARIKHPYIVEFKEAWVEKGCYVCIVTGYCEGGDMAETMKKLNGTYFPEEKLCKWFTQLLLAVEYLHSNYVLHRDLKCSNIFLTKDQDIRLGDFGLAKTLKADDLASSVVGTPNYMCPELLADIPYGFKSDIWSLGCCVYEMAAHRPAFKAFDMAGLISKINRSSIGPLPPCYSPSLKILIKGMLRKSPEHRPTASEVLKHPYLQPYVDQYRPSFAPQTAFSPEKPISAVNITKRHMAESQNSTSSSSDKDSLMSNDRNIATTAPRCDSKATDMDIDDDGSENLQEVIKSSHNEQHSNVETKPQPRTIKNIMMALKEGRGREATSPMRGRETTSPMRGSRVKAGGVSTPKVNTDVPSKLPKPTFIAPSLKPNLESPNVPLKASPDSSKRIYGSPHSKLQLLMTEPSPKVKPKHDMTPPSGPIKQQGEGDGVPPRPRQRTPPSLLRRPTFPGRMRLAGIDVPNAANDSGKLGPSNTGQESEISHSQLFNGSVPRISRPFIREPQNAFEKSSKGMQTDSSNSASSSVSIQGCELADDATTFIDMREHSLPDHDNVTNVVGVESHPDRSPSVSTTCSHCKMAEEASEETCEVTMNFQSTISSNEKVSSNLTDENSKEIFASEDSHPRNQTTTSTTSVCGNRSVDPPAEVAEEIEDLQDISKEMDLTKSLKHPPSNSGENSVCEEVVAVNKLNNRPETVTGDDKFTVKERLSLVAETEPITTVTKIPSQKVSQEKGTVTQNPAAQERQDTSHLPAAFDDVIHVIRHSSYRVGSDQPVMESVEMGVQNVDVGKFINVMRDDIEKRNISSPMALKSSSSSESASLKSNISDQLEMKNTIASFSDATSLKPSVPDHPSLKEQEVSNTVSSVSESDSSELSKCNTPTTEDKPPAKEILDVKSFRQRAEALEELLELSADLLQQNRLEELQVVLKPFGKDKVSPRETAIWLARSLKGMMSEENGGRCSS 1018
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g01393 1018 MobiDBLite consensus disorder prediction 674 698 - -
Trre7g01393 1018 MobiDBLite consensus disorder prediction 318 337 - -
Trre7g01393 1018 MobiDBLite consensus disorder prediction 374 585 - -
Trre7g01393 1018 FunFam Serine/threonine-protein kinase Nek2 5 87 - -
Trre7g01393 1018 MobiDBLite consensus disorder prediction 679 696 - -
Trre7g01393 1018 Gene3D Transferase(Phosphotransferase) domain 1 90 336 - -
Trre7g01393 1018 Gene3D Phosphorylase Kinase; domain 1 1 87 - -
Trre7g01393 1018 FunFam Serine/threonine-protein kinase Nek5 90 335 - -
Trre7g01393 1018 CDD STKc_Nek 7 262 - -
Trre7g01393 1018 MobiDBLite consensus disorder prediction 525 549 - -
Trre7g01393 1018 MobiDBLite consensus disorder prediction 896 943 - -
Trre7g01393 1018 MobiDBLite consensus disorder prediction 294 313 - -
Trre7g01393 1018 MobiDBLite consensus disorder prediction 861 880 - -
Trre7g01393 1018 MobiDBLite consensus disorder prediction 565 585 - -
Trre7g01393 1018 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 5 632 - -
Trre7g01393 1018 Pfam Protein kinase domain 8 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre7g01393 1018 SMART serkin_6 8 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre7g01393 1018 MobiDBLite consensus disorder prediction 781 803 - -
Trre7g01393 1018 MobiDBLite consensus disorder prediction 781 802 - -
Trre7g01393 1018 ProSitePatterns Protein kinases ATP-binding region signature. 14 37 IPR017441 GO:0005524
Trre7g01393 1018 ProSitePatterns Serine/Threonine protein kinases active-site signature. 129 141 IPR008271 GO:0004672|GO:0006468
Trre7g01393 1018 SUPERFAMILY Protein kinase-like (PK-like) 5 317 IPR011009 -
Trre7g01393 1018 MobiDBLite consensus disorder prediction 910 938 - -
Trre7g01393 1018 ProSiteProfiles Protein kinase domain profile. 8 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre7g01393 1018 MobiDBLite consensus disorder prediction 862 880 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g01393 Trre-Chr7 10277308 10282192 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g01393 3 263 MAP Kinase Kinase Kinase AT1G53570 30.075 8.44e-35 138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Trre7g01393 Pkinase 2.9e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g01393 K08857 - gmx:100818747 1409.05