Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g01388 ATGATAGCTATTAAGATTAAAGTTCACATTTTCCTCTTATTTTCCCTCATGATTACGTTGTCTTATGGTGAAACTAACCCAAATGATCTCAAAATTCTGAATGATTTCAAGAAAGGGTTGAAGAATCCAGAGCTTCTGAAATGGCCTGATAATGGAGATGATCCATGTGGTAATCCTTCATGGAATTATGTGTACTGTTCTAAAGGTAGAGTTACTCAAATTCAAGCTAAGAATCTTGGTCTTATAGGTTCATTGCCTTCAAATTTTAATCAACTTTCAGAGCTTCAAAATTTAGGTCTTCAAAGAAATAATCTTAGTGGAATGTTACCTAGTTTTAGTGGATTGTCTAATTTGCAATATGCTTATTTGGATTACAATGAATTTGATGCAATCCCTTTAGATTTCTTCAATGGATTAACCAATATTCAGATTTTGTCTTTGGAAGAAAACCCTTTGTTGAATGCTACTAATGGTTGGTCATTTCCTTTGGATTTGAAAAATTCAGCTCAATTGTCATTTCTCTCTTTGGCAAATTGTAATTTGGTTGGTACATTACCTGATTTTCTAGGCACATTGTCTTCATTATCAGAATTGAGGCTTTCAGGTAACAGAATTTCGGGTGAAATTCCGGTTAGTTTTGGTCAATCGTCGATACAGTTTTTATGGTTGAATGATCAACAAGGTGGTGGAATGACAGGTTCTATCGATGTTATTGCTTCGATGACATTTTTGAGTGTGGTTTGGTTACACGGAAACAAGTTCACCGGAACAATTCCGTCGAATATTGGAAATATCACTTCTCTGCAAGAGCTTAACCTCAATGGTAATCAACTTGTTGGCTTAATTCCAAATTCATTAGCAAATATGGAACTTAAATCACTTGATTTAAATAATAACATGTTCATGGGTCCAATACCAAAGTTTAAGGCTACAAAAGTATCTTATGATTCTAATTTCTTTTGTCAAACTAAACCTGGTCTTGAATGTGCTTCTGATGTTAATGTCTTGTTGGATTTTCTACATAATGTGAATTATCCATCATTTCTTATTACTAAATGGGTTGGTAATGATCCTTGTGGACAACCATGGTTTGGATTAAGATGTAATAACGCGAAGGAGGTATCGATGATTAATTTGCCTAATCAAAAGCTTAATGGTACTTTGAGTCCTTCACTTGCTATGTTAGTTTCAGTACTTGAAATTAAGCTTGCAGGTAACAATTTAAATGGCAAAGTTCCGAGTAATTTTACTGAATTGAAATCATTGACATTGTTGGATTTGAGTGATAACAATTTTGAACCTCCATTGCCAAATTTTCACGATGGTGTGAAAGTTATCACCGATGGTTACCCTCTTTTTGTTAATCAAACTAGAACGAGTCCCGTTCCTATTAGCAGTCCACCGCCTTTAAGTGCTCCACCTTCACCACACATTGTGTTGCCGCCACCATCTCCATCGCCATTCTCCGGTACTCCACATTCCTCTAGCCAAAGTTCAAGCTCTAATCAATCTAGGAACGTCGAATCAAAGGCTCAACCGAGTAATTCACTCAGATTGAAAACAATAGCTTTAGTGTCTGGAGTTGCAGCCTTTGCAGTTTTAGGTCTTTTAGTTATTTGTCTCTTAATATGCTGTTGTATGAAGAAGAAAAAAGGTTCAATTGATGATTTTAGTTCTGCTGTGGTTAAAACTCGAGATCCATCCGATCCAAACACGATGATTAAGTTAGTCGTGTCAGATAGCAACACTGGGAGCTTATCAACAACAACAGGAACAAGTTCTCTAACTAGTGGCGATACCGGAGGCTATCATGTAATTGACTCTGGTAACCTTGGTATTTCAGTTCAAGTTCTACGAAAGGTTACAAACGATTTTGCTTCGGAAAATGAGCTCGGCCGAGGAGGATTTGGAACCGTTTACAAAGGCTATGCCATTGAAGGAAATGAGAGGCTTGCAATAGCACTTGATGTTGCTAGAGGGATGGAATACCTTCACAGTCTTGCTCGACAGACCTTCATCCATCGTGATCTCAAGTCTTCGAATATCCTACTCGGAGATGATATTCGAGCCAAAGTTTCTGATTTTGGTTTGGTCAAACTTGCACCAGATGGTGAGAAGTCTATGGCAACAAGACTTGCTGGAACATTTGGATATGTTGCTCCTGAATATGCAGTGATGGGGAAAATCACGACTAAAGTGGATGTGTTCAGCTACGGCGTGGTGTTGATGGAACTTCTGACTGGACTAGTGGCTCTTGACGAGAGCCGACCAGAGGAAAACCGATACTTAGCCGAATGGTTTTGGCAAATTAAATCAGACAAAGAAAAGCTTAAGGCAGCCATCGATCCAGCACTTGAAGTAAGCGAAGAGACTTTCGAGAGTATTTACACTGTAGCTGAACTTGCCGGACATTGCACTGCTAGGGAAGCAAATCATAGGCCAGATATGGGATATGCAGTCAAGGTGCTGTCGGAATTAGTAGAGAAATGGAGACCGGTTGATGAAGATTTCGATTATAGCGGTGGCGTTGACTTCGGTCAACCGCTTCCGCAATTGTTGAAAATTTGGAAGGAAGCAGACAGCAAAGATAATCCCTGA 2598 0.3865 MIAIKIKVHIFLLFSLMITLSYGETNPNDLKILNDFKKGLKNPELLKWPDNGDDPCGNPSWNYVYCSKGRVTQIQAKNLGLIGSLPSNFNQLSELQNLGLQRNNLSGMLPSFSGLSNLQYAYLDYNEFDAIPLDFFNGLTNIQILSLEENPLLNATNGWSFPLDLKNSAQLSFLSLANCNLVGTLPDFLGTLSSLSELRLSGNRISGEIPVSFGQSSIQFLWLNDQQGGGMTGSIDVIASMTFLSVVWLHGNKFTGTIPSNIGNITSLQELNLNGNQLVGLIPNSLANMELKSLDLNNNMFMGPIPKFKATKVSYDSNFFCQTKPGLECASDVNVLLDFLHNVNYPSFLITKWVGNDPCGQPWFGLRCNNAKEVSMINLPNQKLNGTLSPSLAMLVSVLEIKLAGNNLNGKVPSNFTELKSLTLLDLSDNNFEPPLPNFHDGVKVITDGYPLFVNQTRTSPVPISSPPPLSAPPSPHIVLPPPSPSPFSGTPHSSSQSSSSNQSRNVESKAQPSNSLRLKTIALVSGVAAFAVLGLLVICLLICCCMKKKKGSIDDFSSAVVKTRDPSDPNTMIKLVVSDSNTGSLSTTTGTSSLTSGDTGGYHVIDSGNLGISVQVLRKVTNDFASENELGRGGFGTVYKGYAIEGNERLAIALDVARGMEYLHSLARQTFIHRDLKSSNILLGDDIRAKVSDFGLVKLAPDGEKSMATRLAGTFGYVAPEYAVMGKITTKVDVFSYGVVLMELLTGLVALDESRPEENRYLAEWFWQIKSDKEKLKAAIDPALEVSEETFESIYTVAELAGHCTAREANHRPDMGYAVKVLSELVEKWRPVDEDFDYSGGVDFGQPLPQLLKIWKEADSKDNP 865
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g01388 865 Gene3D Transferase(Phosphotransferase) domain 1 641 838 - -
Trre7g01388 865 MobiDBLite consensus disorder prediction 457 513 - -
Trre7g01388 865 SMART serkin_6 625 827 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre7g01388 865 FunFam Receptor-like kinase TMK4 27 326 - -
Trre7g01388 865 ProSiteProfiles Protein kinase domain profile. 543 827 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre7g01388 865 SMART LRR_typ_2 115 138 IPR003591 -
Trre7g01388 865 SMART LRR_typ_2 92 114 IPR003591 -
Trre7g01388 865 SMART LRR_typ_2 265 288 IPR003591 -
Trre7g01388 865 SMART LRR_typ_2 419 441 IPR003591 -
Trre7g01388 865 SMART LRR_typ_2 192 216 IPR003591 -
Trre7g01388 865 FunFam Leucine-rich repeat receptor-like kinase 331 456 - -
Trre7g01388 865 MobiDBLite consensus disorder prediction 490 513 - -
Trre7g01388 865 SUPERFAMILY L domain-like 25 307 - -
Trre7g01388 865 MobiDBLite consensus disorder prediction 462 489 - -
Trre7g01388 865 Pfam Leucine rich repeat N-terminal domain 330 369 IPR013210 -
Trre7g01388 865 Pfam Leucine rich repeat N-terminal domain 27 67 IPR013210 -
Trre7g01388 865 PANTHER OSJNBA0070M12.3 PROTEIN 11 648 - -
Trre7g01388 865 Pfam Protein kinase domain 652 787 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre7g01388 865 SUPERFAMILY L domain-like 330 439 - -
Trre7g01388 865 SUPERFAMILY Protein kinase-like (PK-like) 607 823 IPR011009 -
Trre7g01388 865 Gene3D Ribonuclease Inhibitor 27 326 IPR032675 -
Trre7g01388 865 ProSitePatterns Serine/Threonine protein kinases active-site signature. 672 684 IPR008271 GO:0004672|GO:0006468
Trre7g01388 865 FunFam PTI1-like tyrosine-protein kinase 3 640 837 - -
Trre7g01388 865 Gene3D Ribonuclease Inhibitor 331 451 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g01388 Trre-Chr7 10249080 10252393 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g01388 83 824 Receptor kinase-like Gene Family AT1G75820 28.692 1.74e-54 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Trre7g01388 Pkinase 1.7e-25 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g01388 - - cam:101505581 1234.55