Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g01380 ATGGGAACGTACTTTCATGGAAACAGCAACAGTTCTGACATCCAACAACCGTCGGCAGAAGGTTTACAGACACTTTACCTTATGAATCCAAACTACGTACCTTATTCCCAGGAAACTCAAAATCCAACACAAAACATGCTTTTCGCTAATCCCAACGCTACCAATACTTCTCCTCACGCGCTTAATCTTGTTAAGTTCCCACACGCGCCTTCATCTTTCAATCAACACCACTTACTTGGAGTTACTATTCCACCATCCAATTTTCTTGGATCCAACACAGCCGACACTCCCTCACAACAGTACCAAGTTACCGGCTTCCATCCCTTTGCATCGTCGGCGACAGCAAATCCTCCTCCCCACTATAACCTGTGGGGGGTAGGATCAGGTAGTTTAGTACCTGACCAATCTGTTATGGCGATAGCAACAACGACAACTACTACAACTAATAGATCGGAGTCTGCTGTTACTGTTGCCGTGACAGCACCTGATGCGGCGGAGTTTCCACCGCCGCATATTGGTTTTCAGAGGCCAGTTTATCAACGCGGATTGTCTCTGAGTCTTTCGTCACAACAAACACCTTACCGGTCAGTTTCAAGGGAAATTGAGGTTTCTCCGGGAAGTCATGGAGGCGGAGAGAACAGTGGAGTTTCGACCATGCATGGTGTTATTTTCGGATCAAAGTATTTGAAAGTAGCACAAGAGCTTCTTGATGAAGTTGTGAATGTGGATAAGGGAATCATGAAAGGAGAATCTGGTGAAGGAGATAATAGTAATAATGAGAATAAAGAGAAGAGGAAAGTGAATATTGAAGCAAGTTCAAGTGGTGGAAGAGAAAACGATGGAGGAAAACAAGTTCTAGTAGCTGAACTAAGTACTGCACAAAGACAAGAACTTCAAATGAAGAAGTCAAAGCTTGTTAGCATGCTTGATGAGGTAGATATACGGTACAAACAATACCACCATCAAATGCAAGGTGTGATATCATCATTTGAACAAGCAGCAGGATATGGAGCAGCAAAGTCTTACACATCCCTTGCTTTAAAGACAATCTCAAAGCAATTTAGAAGTCTTAAAGATGCAATATCTTCACAAATTAAGTCAACTAGCAAGACTTTGGGTGAAGATGATTGCTTAGGAGTTAAGTTAGAAGGCTCTAGGCTTAGGTTTGTCGATCATCATCTCCGACAACAACGTGCACTACAGCAACTCGGAATGATTCAGAGCAATGCTTGGAGGCCTCAAAGAGGCCTTCCGGAGCGAGCTGTTTCTGTTCTCCGTGCTTGGCTTTTTGAGCATTTCTTGCACCCCTATCCCAAAGACTCAGATAAGGTTATGCTTGCAAGACAAACTGGACTTACTCGGAGTCAGGTGTCTAACTGGTTTATAAATGCTCGAGTTCGGTTATGGAAACCAATGGTTGAAGAAATGTACTTAGAAGAAACCAAGGAGCAAGAACAGAAAAATGACTCAAATGATAACACAAATAATATATCCAAAGAATCAAGGAAAGAGTTGTGGTCAGCAAATAATGCTACACAAGATTCAACACCCACAAAACTTGAAAGTTTCAACAACCAAAACACTTCTCCAACTGAGATTTCAAATTCCCATAATAATTCATTGTCAACATCTATCACAAAGTTTGATGTTGAAAGAAATCATGACAAAAATGGATACCCTTTAATGAGTGGAAATGAAAATCATAATGGTGATGGTTATGGATCATTCTCAATGGAAGATATTGGAAGGTTTAATGTTAGTGACCAATTGGCTCCAAGGTTTCATGGAAATGGAGTTTCTCTAACTCTTGGATTACCTCATAATGAAAATCTCTCTTTCTCTTCCACTCAACATGGATTTCTCTCTCAGAATTTACATATGGGAGGGAGGATGGAAATGGGAGAGAATGAAAATGAGTTTTGTGCCATTAATACTACTCCACCTTCTTCTCATTCAGGAACAAGTTATGAGAGTATTGATATTCAAAACAGAAAGAGGTTTGCAGCTGCTCAATTGTTGAGAAATTTTGTGAACTAA 2037 0.4075 MGTYFHGNSNSSDIQQPSAEGLQTLYLMNPNYVPYSQETQNPTQNMLFANPNATNTSPHALNLVKFPHAPSSFNQHHLLGVTIPPSNFLGSNTADTPSQQYQVTGFHPFASSATANPPPHYNLWGVGSGSLVPDQSVMAIATTTTTTTNRSESAVTVAVTAPDAAEFPPPHIGFQRPVYQRGLSLSLSSQQTPYRSVSREIEVSPGSHGGGENSGVSTMHGVIFGSKYLKVAQELLDEVVNVDKGIMKGESGEGDNSNNENKEKRKVNIEASSSGGRENDGGKQVLVAELSTAQRQELQMKKSKLVSMLDEVDIRYKQYHHQMQGVISSFEQAAGYGAAKSYTSLALKTISKQFRSLKDAISSQIKSTSKTLGEDDCLGVKLEGSRLRFVDHHLRQQRALQQLGMIQSNAWRPQRGLPERAVSVLRAWLFEHFLHPYPKDSDKVMLARQTGLTRSQVSNWFINARVRLWKPMVEEMYLEETKEQEQKNDSNDNTNNISKESRKELWSANNATQDSTPTKLESFNNQNTSPTEISNSHNNSLSTSITKFDVERNHDKNGYPLMSGNENHNGDGYGSFSMEDIGRFNVSDQLAPRFHGNGVSLTLGLPHNENLSFSSTQHGFLSQNLHMGGRMEMGENENEFCAINTTPPSSHSGTSYESIDIQNRKRFAAAQLLRNFVN 678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g01380 678 ProSiteProfiles 'Homeobox' domain profile. 408 471 IPR001356 GO:0003677
Trre7g01380 678 Gene3D - 414 494 - -
Trre7g01380 678 SMART prehox3 217 363 IPR006563 -
Trre7g01380 678 CDD homeodomain 411 472 IPR001356 GO:0003677
Trre7g01380 678 MobiDBLite consensus disorder prediction 505 566 - -
Trre7g01380 678 Pfam Associated with HOX 222 362 IPR006563 -
Trre7g01380 678 Pfam Homeobox KN domain 428 467 IPR008422 GO:0003677|GO:0006355
Trre7g01380 678 MobiDBLite consensus disorder prediction 505 547 - -
Trre7g01380 678 FunFam BEL1-like homeodomain protein 9 414 476 - -
Trre7g01380 678 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 107 495 - -
Trre7g01380 678 SUPERFAMILY Homeodomain-like 412 477 IPR009057 -
Trre7g01380 678 SMART HOX_1 411 475 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g01380 Trre-Chr7 10120165 10124954 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g01380 177 677 Homeobox Transcription Factor Family AT2G35940 46.384 4.35e-126 387
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Trre7g01380 POX 3.1e-48 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g01380 - - mtr:25492199 977.622