Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g01378 ATGAAAGAACCGGTGACAACCGTGACCGGAATAACATACGATCGAGAAAGCATCGAAAAATGGTTGTCGAAGGCCAAGATTTGTGTTTGTCCAGTTACAAACCAATCACTACCAAGAGGTACACAATATTTGACTCCAAATCACACACTTCAAAGGCTAATCAAAGCATGGATTTTATCAAATGAAGCCAAAGGTGTTGGTGAAGATCAAGTTTCTTCTCCTAAATCTCCTATCAATAGAATCCATCTTCAAAAGCTTGTCAAGAATCTTGATGTTCCTCATTGTTATCAAGCATCGATGGAGAAGATTCATGATCTTGCTAAACAAGATGTGTGCCCTTTGGGTAGAAACCGAACGAAGATAGTGGAAGCGGGTGGAGTAACTGAGCTCGTTGAACTCGAGCTTGAAAAACCCGAGAAGAACATGACCGAGCTTGTATTCAACCTTTTGGCACATTTGTGCTCGTGTGCAGAGGGAAGAGAACAATTTTTGCAACACGCGGCAGGTCTAGCTATGATTTCGAAAAGGATTTTGAGGGTCTCAGCCGCAACCGATGATCTAGCTATTCAAGTAATTTCAATGATTGCGAAGTATACAACTTCAAAAGAGATTGTTTTAGAGATGTTGAGGGTTGGAACGGTTTCGAAGCTTTGCATGGTAATGCAAGCAGATTGTGCTTCGTATTTGAAAGAGAAAGCTAGAGGCATACTTAGGTTACATTCAACTTCTTGGAATAATTCTCCTTGCATACAAGTGTATTTGTTAACTAGGCACCAAAGGTGA 783 0.4074 MKEPVTTVTGITYDRESIEKWLSKAKICVCPVTNQSLPRGTQYLTPNHTLQRLIKAWILSNEAKGVGEDQVSSPKSPINRIHLQKLVKNLDVPHCYQASMEKIHDLAKQDVCPLGRNRTKIVEAGGVTELVELELEKPEKNMTELVFNLLAHLCSCAEGREQFLQHAAGLAMISKRILRVSAATDDLAIQVISMIAKYTTSKEIVLEMLRVGTVSKLCMVMQADCASYLKEKARGILRLHSTSWNNSPCIQVYLLTRHQR 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g01378 260 Gene3D - 80 252 IPR011989 -
Trre7g01378 260 SMART Ubox_2 1 57 IPR003613 GO:0004842|GO:0016567
Trre7g01378 260 PANTHER WDSAM1 PROTEIN 109 251 IPR045185 GO:0061630
Trre7g01378 260 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 72 IPR013083 -
Trre7g01378 260 SUPERFAMILY ARM repeat 115 233 IPR016024 -
Trre7g01378 260 SUPERFAMILY RING/U-box 1 62 - -
Trre7g01378 260 ProSiteProfiles U-box domain profile. 1 64 IPR003613 GO:0004842|GO:0016567
Trre7g01378 260 Pfam U-box domain 1 62 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g01378 Trre-Chr7 10083428 10084618 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g01378 116 257 U-box Gene Family AT3G11840 46.853 1.79e-39 140
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g01378 - - gmx:100778547 231.106
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g03864 11 51866344 51867558 Trre7g01378 7 10083428 10084618 PCT