Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g01372 ATGGGTGTCTCAGGGAAATGGATTAGAGCATTAGTTGGTCTAAAGAAATCAGAAAAGACCGGGTCCTCAGAGAAGGATGGGAATAAGGATAGCAAGTCACGCCATCGGAGAAAGCATTCCATCGAAATCGACAATAGCAAACTTCAAAATGAGCTTGATGATGTTGAAGCTACACCTATTGGAGATGCAGATAATGCAATTCCCCAATCAAACCTTGATGTTCATTATTCTCCTTCTACTTCACAACAAGCACATGATACTGGACATAATCATCAAATATCAAGAGAAGAATGGGCTGCGATATGCATTCAAACAGCATTTCGAGGATTTCTGGCCAGAAGAGCGCTACGAGCTTTGAAAGGACTGGTAAGGCTTCAGGCCCTTGTAAGAGGCCATGCAGTAAGAAAACAAGCTGCAATAACTCTCCGTTGTATGCAAGCTTTGGTGAGGGTTCAGGCTCGTGTTCGGGCAAGGCGTGTTCGCTTGTCATTGGAAAGCCAAACAGAACAACAGAAACTTCAGCAACAGCTTGTAAACGAAGCCCGTGTTCGAGAAATTGAAGAAGGTTGGTGTGACAGTGTGGGATCTGTTGAAGAAATTCAATCCAAAATATTAAAGAGACAGGAGGCTGCAGCAAAACGTGAGAGAGCCATGGCATATGCTCTAGCGCATCAGTGGCAGGCAGGATCAAGGCAGCAGGCTGTTTCTTCAGGGTTTGAACCTGATAAAAGTAGTTGGGGCTGGAATTGGTTGGAAAGATGGATGGCTGTACGTCCTTGGGAGAATCGTTTTCTTGACATAAACACGAAAGATGGAGGAAAGGCAGACGAAGATGATGTTATGGATGGTAGAAATGGAATCAGACCTCAGTTCAGGTCTACTAACACGAAATCAAATCCTCCAAATATTCATCCAAGTGTTGCCGGTCATAAAACTGGTCTGTCTGTCTCTGATGGCTGTGATTCTTCTTCCACTGGCAAGTCAGCAGGTTTACTCGAGACATCGAACACACAAGCTGTTAAACCAAAATCTAATACAAATGTTCAAAATCCCATTGAAGAAACCAACTCAAAATCTGGATTTCCAAGATCTCAAAGTAATCCAAAGGAGAGAAAGTCACAGGTAGATAAACAGGCAAAAAAGCGATTATCACTTCCTAACAATGGCGTTGGTTCCGGGGCTCAAACGGCCAAATATCCTACCAGATCTAACGTGAAAGGGACACGTAGCACGCAAAAGCCTATAAGGGATAAGCCTAAGCCTAAGATCAATGAAGGCGGGGATGTGAGTCTTGCTAAATCTGTTCCACAGCCCGCGGTCGTGTAA 1326 0.4412 MGVSGKWIRALVGLKKSEKTGSSEKDGNKDSKSRHRRKHSIEIDNSKLQNELDDVEATPIGDADNAIPQSNLDVHYSPSTSQQAHDTGHNHQISREEWAAICIQTAFRGFLARRALRALKGLVRLQALVRGHAVRKQAAITLRCMQALVRVQARVRARRVRLSLESQTEQQKLQQQLVNEARVREIEEGWCDSVGSVEEIQSKILKRQEAAAKRERAMAYALAHQWQAGSRQQAVSSGFEPDKSSWGWNWLERWMAVRPWENRFLDINTKDGGKADEDDVMDGRNGIRPQFRSTNTKSNPPNIHPSVAGHKTGLSVSDGCDSSSTGKSAGLLETSNTQAVKPKSNTNVQNPIEETNSKSGFPRSQSNPKERKSQVDKQAKKRLSLPNNGVGSGAQTAKYPTRSNVKGTRSTQKPIRDKPKPKINEGGDVSLAKSVPQPAVV 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g01372 441 Gene3D - 97 138 - -
Trre7g01372 441 MobiDBLite consensus disorder prediction 388 410 - -
Trre7g01372 441 ProSiteProfiles IQ motif profile. 145 172 IPR000048 GO:0005515
Trre7g01372 441 MobiDBLite consensus disorder prediction 268 441 - -
Trre7g01372 441 ProSiteProfiles IQ motif profile. 96 124 IPR000048 GO:0005515
Trre7g01372 441 ProSiteProfiles IQ motif profile. 120 147 IPR000048 GO:0005515
Trre7g01372 441 MobiDBLite consensus disorder prediction 18 51 - -
Trre7g01372 441 MobiDBLite consensus disorder prediction 70 88 - -
Trre7g01372 441 FunFam IQ-domain 11 95 146 - -
Trre7g01372 441 MobiDBLite consensus disorder prediction 14 91 - -
Trre7g01372 441 MobiDBLite consensus disorder prediction 316 368 - -
Trre7g01372 441 MobiDBLite consensus disorder prediction 268 285 - -
Trre7g01372 441 PANTHER IQ-DOMAIN 5-RELATED 1 392 - -
Trre7g01372 441 SMART iq_5 95 117 IPR000048 GO:0005515
Trre7g01372 441 SMART iq_5 118 139 IPR000048 GO:0005515
Trre7g01372 441 MobiDBLite consensus disorder prediction 288 305 - -
Trre7g01372 441 Coils Coil 38 58 - -
Trre7g01372 441 Pfam IQ calmodulin-binding motif 98 117 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g01372 Trre-Chr7 9995381 10001176 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g01372 1 418 IQD Protein Family AT3G22190 53.882 1.66e-116 345
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g01372 - - tpra:123923158 778.474