Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g01371 ATGTTTGGAAGAGCACCCAAGAAAAGTGACAGTACGAGGTACTATGAAATCTTAGGTGTATCTAAGAATGCTTCTCCGGATGATTTGAAGAAAGCTTACAAAAAAGCTGCTATTAAGAATCATCCTGATAAGGGTGGTGATCCTGAGAAGTTCAAGGAGCTTGCACAAGCTTATGAGGTTCTGAGTGATCCTGAGAAGCGTGAGATATATGATACATATGGTGAGGATGCACTTAAGGAAGGAATGGGTGGTGGAGGTGGTGGTGGACATGACCCATTTGACATCTTCTCGTCTTTCTTTGGTGGTGGTGGTAGCAGCCGAGGAGGGCGAAGGCAGAGACGTGGAGAAGATGTTGTTCACCCTCTCAAGGTCTCTTTGGAAGACCTTTACCTTGGGACATCTAAGAAGCTGTCTCTCTCGAGAAATGTCTTGTGCTCCAAGTGCAGCGGCAAAGGTTCTAAGTCCGGGGCTTCCATGAAGTGTGCTGGTTGTCAAGGAACTGGTATGAAGGTTTCTATCAGGCACCTTGGTCCATCAATGATTCAGCAAATGCAGCATCCTTGCAATGAATGTAAGGGTACCGGTGAAACCATCAATGATAAAGATCGCTGCCCACAGTGTAAGGGGGAGAAGGTTGTACAAGAGAAGAAAGTACTTGAAGTTCATGTGGAGAAGGGAATGCAGAACAGCCAGAAGATTACATTCCCTGGTGAAGCTGATGAAGCTCCAGACACAGTTACTGGGGATATTGTATTTGTGCTTCAGCAGAAAGAACATCCCAAGTTCAAAAGAAAGAGCGAGGACCTTTTTGTAGAGCACACATTGTCCCTCACTGAGGCTTTATGTGGTTTCCAATTTGTGTTGACTCACTTGGATGGCCGCCAACTCCTTATCAAATCAAATCCCGGAGAAGTTGTCAAGCCTGATTCATTCAAAGCTATTAATGACGAGGGAATGCCGATCTACCAGAGGCCGTTTATGAAGGGCAAGCTTTACATTCACTTTACTGTGGAATTCCCCGAGACTCTAACTCCTGATCAGGTGAAGGGTTTGGAGGCTGTTCTTCCAGCTAAACCTTCATCACAGTTGACAGACATGGAGCTGGATGAGTGCGAGGAAACTACACTTCATGATGTCAATATGGAAGAGGAGACGAGAAGGAAACAGCAACAACAACAGGAAGCATATGATGAAGATGATGATATGCCTGGTGGAGCACAGAGGGTACAGTGCGCCCAGCAGTAG 1245 0.4594 MFGRAPKKSDSTRYYEILGVSKNASPDDLKKAYKKAAIKNHPDKGGDPEKFKELAQAYEVLSDPEKREIYDTYGEDALKEGMGGGGGGGHDPFDIFSSFFGGGGSSRGGRRQRRGEDVVHPLKVSLEDLYLGTSKKLSLSRNVLCSKCSGKGSKSGASMKCAGCQGTGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVVQEKKVLEVHVEKGMQNSQKITFPGEADEAPDTVTGDIVFVLQQKEHPKFKRKSEDLFVEHTLSLTEALCGFQFVLTHLDGRQLLIKSNPGEVVKPDSFKAINDEGMPIYQRPFMKGKLYIHFTVEFPETLTPDQVKGLEAVLPAKPSSQLTDMELDECEETTLHDVNMEEETRRKQQQQQEAYDEDDDMPGGAQRVQCAQQ 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g01371 414 CDD DnaJ 14 63 IPR001623 -
Trre7g01371 414 Pfam DnaJ domain 14 71 IPR001623 -
Trre7g01371 414 Pfam DnaJ C terminal domain 119 340 IPR002939 -
Trre7g01371 414 Gene3D - 145 211 - -
Trre7g01371 414 PANTHER DNAJ-LIKE-2, ISOFORM A-RELATED 12 396 IPR044713 GO:0006457|GO:0030544
Trre7g01371 414 FunFam DnaJ subfamily A member 2 259 341 - -
Trre7g01371 414 FunFam Chaperone protein dnaJ 3 212 252 - -
Trre7g01371 414 SUPERFAMILY DnaJ/Hsp40 cysteine-rich domain 142 214 IPR036410 -
Trre7g01371 414 ProSitePatterns Nt-dnaJ domain signature. 51 70 IPR018253 -
Trre7g01371 414 ProSiteProfiles Zinc finger CR-type profile. 132 216 IPR001305 GO:0031072|GO:0051082
Trre7g01371 414 ProSiteProfiles dnaJ domain profile. 13 74 IPR001623 -
Trre7g01371 414 SUPERFAMILY HSP40/DnaJ peptide-binding domain 111 269 IPR008971 GO:0006457|GO:0051082
Trre7g01371 414 Gene3D - 259 341 - -
Trre7g01371 414 Hamap Chaperone protein DnaJ [dnaJ]. 10 366 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Trre7g01371 414 CDD DnaJ_zf 145 211 IPR001305 GO:0031072|GO:0051082
Trre7g01371 414 MobiDBLite consensus disorder prediction 374 414 - -
Trre7g01371 414 Pfam DnaJ central domain 145 211 IPR001305 GO:0031072|GO:0051082
Trre7g01371 414 FunFam DnaJ subfamily A member 2 145 211 - -
Trre7g01371 414 SUPERFAMILY HSP40/DnaJ peptide-binding domain 262 349 IPR008971 GO:0006457|GO:0051082
Trre7g01371 414 CDD DnaJ_C 116 343 - -
Trre7g01371 414 SUPERFAMILY Chaperone J-domain 8 107 IPR036869 -
Trre7g01371 414 SMART dnaj_3 12 66 IPR001623 -
Trre7g01371 414 PRINTS DnaJ domain signature 15 33 IPR001623 -
Trre7g01371 414 PRINTS DnaJ domain signature 46 66 IPR001623 -
Trre7g01371 414 PRINTS DnaJ domain signature 66 85 IPR001623 -
Trre7g01371 414 Gene3D DnaJ domain 10 109 IPR036869 -
Trre7g01371 414 Gene3D - 110 257 - -
Trre7g01371 414 FunFam dnaJ protein homolog 10 111 - -
Trre7g01371 414 MobiDBLite consensus disorder prediction 374 395 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g01371 Trre-Chr7 9978339 9981387 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g01371 14 73 C2H2 Transcription Factor Family AT1G74250 44.928 2.83e-12 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g01371 K09503 - gmx:547558 692.189
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre7g01371 7 9978339 9981387 Trre7g01371 7 9978339 9981387 ECH
Trre11g03873 11 51991819 51993863 Trre7g01371 7 9978339 9981387 PCT