Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g01365 ATGTCAATGGACATGATGGGAACTGAACGTGTTTGTTATGTTCACTGCAACTTCTGCAACACAATTCTTGCGGTTAATGTTCCATACAGCAGTATGCTAACCATAGTGACAGTTAGATGTGGACATTGTGCTAATTTGCTATCAGTTAACATGGTGGCTGCATCACTTCAACCATTTTCTCCTCCTCAACTGCCTCAGAAACAGCACATAATCCTTGAAGAACCAAGCAGCAAAGAAATGGGTTCATCTTCAAAATGCAACAAAATAGCATCATTTGAGGCAGTAGTTGAGCATGAACAACCTAGGATTCCTCCCATTCGTCCTATAGAGAAAAGACATCGTGTTCCTTCTGCTTATAACCGATTCATTAAGGAGGAAATTCAAAGGATTAAGGCTAGTAATCCAGATATCAGTCATAGGGAGGCTTTCAGTTCGGCAGCAAAAAATTGGGCACATTTCCCTCATATTCACTTTGGGAAGCAACAAGCAAAATTGGACAATGGTGAAGGAACTCATGAAAAGACTAATGGATTCTACTGA 540 0.4037 MSMDMMGTERVCYVHCNFCNTILAVNVPYSSMLTIVTVRCGHCANLLSVNMVAASLQPFSPPQLPQKQHIILEEPSSKEMGSSSKCNKIASFEAVVEHEQPRIPPIRPIEKRHRVPSAYNRFIKEEIQRIKASNPDISHREAFSSAAKNWAHFPHIHFGKQQAKLDNGEGTHEKTNGFY 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g01365 179 CDD HMG-box_SF 114 150 - -
Trre7g01365 179 PANTHER PROTEIN YABBY 6-RELATED 3 163 IPR006780 GO:0007275
Trre7g01365 179 SUPERFAMILY HMG-box 105 154 IPR036910 -
Trre7g01365 179 Pfam YABBY protein 8 159 IPR006780 GO:0007275
Trre7g01365 179 Gene3D High mobility group box domain 110 166 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g01365 Trre-Chr7 9930334 9937471 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g01365 1 179 C2C2-YABBY Transcription Factor Family AT1G08465 56.614 5.73e-68 203
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Trre7g01365 YABBY 2.1e-68 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g01365 K25796 - gmx:100500091 277.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g03878 11 52040173 52048305 Trre7g01365 7 9930334 9937471 PCT