Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g01364 ATGTCAATGGACATGATGGGAACTGAACGTGTTTGTTATGTTCACTGCAACTTCTGCAACACAATTCTTGCGGTTAATGTTCCATACAGCAGTATGCTAACCATAGTGACAGTTAGATGTGGACATTGTGCTAATTTGCTATCAGTTAACATGGTGGCTGCATCACTTCAACCATTTTCTCCTCCTCAACTGCCTCAGCCACAGAAACAGCACATAATCCTTGAAGAACCAAGCAGCAAAGAAATGGGTTCATCTTCAAAATGCAACAAAATAGCATCATTTGAGGCAGTAGTTGAGCATGAACAACCTAGGATTCCTCCCATTCGTCCTATAGAGAAAAGACATCGTGTTCCTTCTGCTTATAACCGATTCATTAAGGAGGAAATTCAAAGGATTAAGGCTAGTAATCCAGATATCAGTCATAGGGAGGCTTTCAGTTCGGCAGCAAAAAATTGGGCACATTTCCCTCATATTCACTTTGGGAAGCAACAAGCAAAATTGGACAATGGTGAAGGAACTCATGAAAAGACTAATGGATTCTACTGA 546 0.4066 MSMDMMGTERVCYVHCNFCNTILAVNVPYSSMLTIVTVRCGHCANLLSVNMVAASLQPFSPPQLPQPQKQHIILEEPSSKEMGSSSKCNKIASFEAVVEHEQPRIPPIRPIEKRHRVPSAYNRFIKEEIQRIKASNPDISHREAFSSAAKNWAHFPHIHFGKQQAKLDNGEGTHEKTNGFY 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g01364 181 CDD HMG-box_SF 116 152 - -
Trre7g01364 181 Gene3D High mobility group box domain 112 168 IPR036910 -
Trre7g01364 181 Pfam YABBY protein 8 161 IPR006780 GO:0007275
Trre7g01364 181 SUPERFAMILY HMG-box 107 156 IPR036910 -
Trre7g01364 181 PANTHER PROTEIN YABBY 6-RELATED 3 165 IPR006780 GO:0007275
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g01364 Trre-Chr7 9930334 9937471 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g01364 1 181 C2C2-YABBY Transcription Factor Family AT1G08465 57.672 1.45e-69 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Trre7g01364 YABBY 9.7e-69 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g01364 K25796 - gmx:100500091 270.396