Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g01352 ATGTTTAACGGTATGATGGATCCTGATTTGATCAGAATCGCTCAAGAACAGATGAGTCGCATGTCACCTGCTGATATGGCTCGGATCCAACAACAGATGATGTCTAATCCTGAGTTGATGAGGATGGCTTCTGAAAGTATGAAGAATATGAATCCTGAAGATTTTAAACTTGCTGCTGAACAGTTAAAGCATACACGGCCTGAAGAAATGGCTGAGATTGGTCAAAAGATGGCTAATGCATCGCCTGATGAAGTTGCGGCTATGCGTACTCATGCTGAAGCTCAGATGAAATATCAATTGAATGCAGCTGAGATGTTGAAGAAGCAGGGAAATGAACTTCACAATCAAGGAAAGTTTGATGATGCTTTGCAGAAGTATAAGCTGGCTAAGGAAAACATTAAAGAGATTCCATCTTTTCAAAGTAGAAAGCTTCTTTTGGCGTGTTCACTTAACTTGATGTCCTGTTACTTGAAGACAAGGCAGTATGATGAGTGCATAAAAGAAGGTTCTGAGGTTTTGGTATATGATTCAAAGAACCTTAAGGCTCTTTATCGAAGGGGTCAGGCATATAAGGAACTAGGCCGTCTGCAGGATGCTGTTACTGATTTGAGCAACGCACTTGAAGTGTCTCCTGATGATGATACAACTGAGGAGCTTTTGCGGGACACCAAGGAACAGTTGACAAAGGAAGGTGGTCATTTTGCACCTGGAAAATTAGTAATTGAAGAAATAACTGAAGTCGAGAATGTGCCTTCTGGAAACAACAGAAGCTCTTCTTTCGAACACACAGTTGATCAACCGCAAAAATCTGGTGGTTCCTCCAAGAGTAGCAGTATAGCTAACAACGGAAATCCAAAATCAAAACCAGATAGTTTAGATACACTGAGAAAAGATCCAGAAGCCATCAGATCATTTCAGAACATCATTTCAAATGCCGATCCTGCCACCCTGGCTGCTTTGAACGTTGGACAATCCAAAGACGTGTCTCCAGATATGATTAAAGCATCCACAGAAATGATCGGAAAGATGTCACCAGAGGAACTTCAAAAAATGCTTGACATGGCGTCTTCATTTCAAGGGGACAACCCATTTTTAAGAGGAGGTTCCTCTAGTTCTCCATTCAACCCTGGATCGATGCCTCCAAACATGACACCTGATATGTTTAAAACAGCAAGTGACATGATAAGTAAAATGCCACCAGATGACCTTAAGAAGATGTTTGAAATGGCATCCGTACTGCAAGGGAAAGAATCTATTCCATCATCAGCAGCTGTAGACAAGAATGAAAGAACTGTTTCACAGTCAAATTTCCCATCCTCAAGCACCACTCGTGATTTTGGAGAATCAAGTTCTTCTCACAATGTGTTTTCAGATAATAGAAATGCTTCAGAGCCAAACTTCCCATCCTCAAGCACTGATTTACAAGAACAGATGAGAAACCAGATGAAAGATCCAGCTATGCGGCAGATGTTCACTTCAATGTTTAAAAATATGAGCCCAGAAATGATGGCAAACATGGGAGAACAATTTGGTTTCAAGCTTTCACCAGAAGACGCAGCAAAAGCTCAGCAAGCTATGTCATCCTTATCACCAGAGAATTTGGATAAAATGATGCTTTGGGCGGACAGGATTCAAAGAGGAGCTGAATGTGCGAAGAAGACAAAGAACTGGTTGCTAGGGAAACAAGGCTTTATCTTAGCAATCTGCATGCTCATTTTGGCCATCATTCTTCACCGGTTAGGTTTCATTGGTAGCTAG 1758 0.4135 MFNGMMDPDLIRIAQEQMSRMSPADMARIQQQMMSNPELMRMASESMKNMNPEDFKLAAEQLKHTRPEEMAEIGQKMANASPDEVAAMRTHAEAQMKYQLNAAEMLKKQGNELHNQGKFDDALQKYKLAKENIKEIPSFQSRKLLLACSLNLMSCYLKTRQYDECIKEGSEVLVYDSKNLKALYRRGQAYKELGRLQDAVTDLSNALEVSPDDDTTEELLRDTKEQLTKEGGHFAPGKLVIEEITEVENVPSGNNRSSSFEHTVDQPQKSGGSSKSSSIANNGNPKSKPDSLDTLRKDPEAIRSFQNIISNADPATLAALNVGQSKDVSPDMIKASTEMIGKMSPEELQKMLDMASSFQGDNPFLRGGSSSSPFNPGSMPPNMTPDMFKTASDMISKMPPDDLKKMFEMASVLQGKESIPSSAAVDKNERTVSQSNFPSSSTTRDFGESSSSHNVFSDNRNASEPNFPSSSTDLQEQMRNQMKDPAMRQMFTSMFKNMSPEMMANMGEQFGFKLSPEDAAKAQQAMSSLSPENLDKMMLWADRIQRGAECAKKTKNWLLGKQGFILAICMLILAIILHRLGFIGS 585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g01352 585 Pfam Tetratricopeptide repeat 181 213 IPR001440 GO:0005515
Trre7g01352 585 ProSiteProfiles TPR repeat profile. 180 213 IPR019734 GO:0005515
Trre7g01352 585 MobiDBLite consensus disorder prediction 249 289 - -
Trre7g01352 585 MobiDBLite consensus disorder prediction 249 294 - -
Trre7g01352 585 SUPERFAMILY TPR-like 96 224 IPR011990 GO:0005515
Trre7g01352 585 PANTHER TPR_REGION DOMAIN-CONTAINING PROTEIN 4 372 - -
Trre7g01352 585 Gene3D Tetratricopeptide repeat domain 89 233 IPR011990 GO:0005515
Trre7g01352 585 MobiDBLite consensus disorder prediction 418 476 - -
Trre7g01352 585 SMART tpr_5 146 179 IPR019734 GO:0005515
Trre7g01352 585 SMART tpr_5 103 136 IPR019734 GO:0005515
Trre7g01352 585 SMART tpr_5 180 213 IPR019734 GO:0005515
Trre7g01352 585 ProSiteProfiles TPR repeat region circular profile. 180 213 - -
Trre7g01352 585 MobiDBLite consensus disorder prediction 424 476 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g01352 Trre-Chr7 9846786 9852606 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g01352 99 227 Calmodulin-binding Proteins AT5G48570 34.815 7.58e-16 79.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g01352 - - gmx:100800315 892.108