Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g01343 ATGGAGTGGAACAGAGGCCACATCATAGGACATGGCTCAACTGCCACCGTCTCCCTTGCCACGCTTAACGGTGACATCTGTGCCGTGAAGTCATCGGAGCTATTGTATTCTGAGCCTCTTAAGAGAGAGCAAAATATTATATCTTCTCTATGCTATCCCAATCCTTATGTGGTTAATTATAAAGGTTATGACATTACCATGGAGAATAACAAGCTCATGTACAATCTATTCTTGGAGTACATGCCGTTCGGCACGCTTAGTCAACACGGTGGACTGCTCAATGAGCAGACCATCGTGTGCTATACAAGGCAAGTATTAAAAGGGTTAGATTATTTGCATTCAAAAGGGTTGGTGCATTGCGACATTAAGGGCGCGAACATCTTGATTGGAGAAGATGGAGCCAAAATTGGAGACCTTGGATGTGCCAAGAGTGTAAATGAAGTCGCGGCGCCAATCCGTGGCACCCCAGTTTTTATGGCGCCGGAGGTAGCACGCGGTGAAGAACAAGGATGTCCTAGTGATATTTGGTCACTTGGTTGCACTATAATTGAAATGGCAACTGGTTCTTCACCGTGGCCTAATGTAGATGACCCTATTTCAACACTTTATCATATAGCATACTCCAATTATTGTCCTAAAATTCCATGTTTTTTATCTCATCAAGCAAAGGACTTTATAGAAAAATGTTTAAGAAGGAATCCAAAAGAGAGGTATTCAGCTAGTCAACTTTTGAGTCATCCATTTCTTGAAGAGTTATGTTCCAATTCTAAGCAAGTTGTGGAATCTAATTCAATTTCACCAACTAGTATTCTTGAACAAGGCATTTGGTGTTCTATGGAAGAATCACAAAGCCTTAGGTTAGAGAATTCTATTTTTGATGATAGAATCAGAAGATTAGCAGGAGAAACTTGTTTAACAAGGTGGCATGATAATCATGATGAGAATTGGATCACAATTAGAGAGAATGAAGTTGATGTTTCTTGTAATTGTGGGTTAGAGATAGGTTCAACTAATGATGAGTTGGTAAAAAGTAATGTGAAAGATGGAATTAGTGGGAATTTTTGTAAGGGTCAAATTCACATTTGTAGGGATGGTAGTTTTGTAGGTAGTAGTGATAATAATTTTCAGCTAGGTATTGTTAAGATGATAGGTCCATCAATATTAAATGTTTTATAA 1176 0.3886 MEWNRGHIIGHGSTATVSLATLNGDICAVKSSELLYSEPLKREQNIISSLCYPNPYVVNYKGYDITMENNKLMYNLFLEYMPFGTLSQHGGLLNEQTIVCYTRQVLKGLDYLHSKGLVHCDIKGANILIGEDGAKIGDLGCAKSVNEVAAPIRGTPVFMAPEVARGEEQGCPSDIWSLGCTIIEMATGSSPWPNVDDPISTLYHIAYSNYCPKIPCFLSHQAKDFIEKCLRRNPKERYSASQLLSHPFLEELCSNSKQVVESNSISPTSILEQGIWCSMEESQSLRLENSIFDDRIRRLAGETCLTRWHDNHDENWITIRENEVDVSCNCGLEIGSTNDELVKSNVKDGISGNFCKGQIHICRDGSFVGSSDNNFQLGIVKMIGPSILNVL 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g01343 391 Pfam Protein kinase domain 5 249 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre7g01343 391 ProSiteProfiles Protein kinase domain profile. 3 249 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre7g01343 391 Gene3D Phosphorylase Kinase; domain 1 1 81 - -
Trre7g01343 391 SUPERFAMILY Protein kinase-like (PK-like) 3 257 IPR011009 -
Trre7g01343 391 SMART serkin_6 3 249 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre7g01343 391 CDD STKc_MAPKKK 2 249 - -
Trre7g01343 391 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 3 323 - -
Trre7g01343 391 ProSitePatterns Serine/Threonine protein kinases active-site signature. 117 129 IPR008271 GO:0004672|GO:0006468
Trre7g01343 391 ProSitePatterns Protein kinases ATP-binding region signature. 9 30 IPR017441 GO:0005524
Trre7g01343 391 Gene3D Transferase(Phosphotransferase) domain 1 83 291 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g01343 Trre-Chr7 9764959 9766134 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g01343 1 279 MAP Kinase Kinase Kinase AT2G32510 53.425 3.05e-100 300
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Trre7g01343 Pkinase 2.9e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g01343 K20716 - gmx:100819665 445.662
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre7g01343 7 9764959 9766134 Trre7g01343 7 9764959 9766134 ECH
Trre11g03900 11 52216757 52217944 Trre7g01343 7 9764959 9766134 PCT