Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g01334 ATGGAACTTCGTTCTCGTCGACGCGTTTCCGATGATAACGATTCCGCGGATAGGAAGGGGAAGAAGCCGATGATTGATGATACTGATGGAAAGATTGACATTGATACCGACGAAGATGATCATGCTGTGTCTTTGAAATCAGATTCTGATTATGAAGCTGAAGACTTGGGTGGGAACTTCCCATTTGACTTGAATCAAGACCCAACTTTAAGCGTTAGTGATTTTGATGGAGAAGATAATGATTCTGATTTTTCTGATGGTAGTGAGTCTTTGTCTAAACGGATAATGGCACAGTCCAGAAAGAGAGGAAGAAAATCCAAGATAGGAATCAGAGATTTTAGTGATTTAGATGCTTTAGGTAGAGTGTTCGAGGAGAATGAGTTACCTAACGTGACATGGAAGACAAAAGCTAAGAAAACAAAAAAGGGAGATCCTAAGCCAGTGCTGTTATGGCATGCTTGGAAAGAAGAACATGAGAGATGGATTGATCAGAATTTGTTGGAAGACGTTACCTTGGATCAAAGTGAAGTGATGAATGAGACGGCCGAGGCATCGTCAGATCTGATTGTTCCTTTGTTGAGGTACCAAAGGGAATGGTTAGCCTGGGCTTTGAAACAGGAAAGTTCCGTAACTAGAGGAGGAATCCTTGCTGATGAAATGGGCATGGGGAAAACTATTCAAGCAATTGCCCTTGTCCTTGCTAAGCGTGAATTACAACAAATGAGTTGTGAATCAGATGAACAATCACATTCGCCAGGGTCATCTAAAGTCCTCCCTGTGATCAAAGGAACACTTGTCATTTGTCCTCTGGTTGCTGTTAATCAGTGGGGTAGTGAGATTGATCGATTTACTTTGAAAGGAAGCACCAAAGTTCTGATTTATCATGGGCCGAAGAGAGAGAATTTTACTGAACAGTTCTCGGAGTATGATTTTGTAATAACAACATATTCTACTGTTGAATCAGAGTACAGAAAGCATGTGATGCCTCCTAAGGAGAAGTGCCCATATTGTGGAAAACTATATAAGCCGAGTAAGTTAGATATTCACCTGAAGTACCATTGTGGGCCCAATGCTATTAAAACAAGCAAACAATCAAAGCAAAGCAAGAAAAATAAAAGTGGTCAGAGTTCAAAGATGGATGGAGAGTTGAAACATAACTCTATCAAGAAGAAGAAAGGGGAAATGTGCCTCGGAGTAGAAGGCAATGAGAAGTCATTTTTGCATACTGTAAAGTGGCAGAGGATCATATTGGATGAGGCACACTTTATAAAATCTAGGCATTGTAACACTACTAAAGCAGTTCTTGCTTTAGAGTCTTCTTACAAATGGGCATTAAGTGGTACACCCCTTCAGAATCGTGTTGGAGAGCTATATTCTTTGGTACGATTTCTGCAAATAGTTCCTTTTTCCTATAACCTGTGCAAGGACTGTGATTGCAGGATACTTGATCATAGCTCCTCTAAAGAATGTCCAAACTGCCCCCACAGTTCAGTTAGGCATTTTTGCTGGTGGAACAAAAATATCGCGACACCAATTCAAACACACGGATATGGCAATAGTGGTAAAAGAGCTATGATATTGCTCAAAAACAAAATTTTGAAGAGCATAGTTTTAAGGCGAACTAAAATAGGCAGGGCTGCTGATCTTGAACTTCCTCCTAGGATCGTTTCACTGAGGAGGGATAGTCTGGATATAAAAGAGCAAGACTATTACGAATCACTATACAATGAAAGTCAGGCACAGTTTAATACGTATGTCGAAGCAAATACTGTGACAAATAATTATGCTCATATTTTTGACCTCCTCACACGACTACGTCAGGCTGTGGATCATCCATATCTTGTGGTGTATTCTCCAACTGCCACAGCATTAAAGGGTGAAAACTTGGTTAGTAATGGTGAAAAAGAATGTGGCCTTTGTCACGATACTGTTGAAGATCCTGTGGTTACCTCTTGTCAGCATACTTTTTGCAAGGGATGCTTGATAGATTTCTCTGGTTCTTTGGGACGCGTATCATGCCCCTCATGCTCTACACTACTCACCGTTGATTTGACTTCCAACAAAGATGCCGTGGTTAATAAAACAACCATCAAGGGTTTCAGATCTTCAAGCATTTTAAACAGAATTCAAATCGAGAATTTTCAGACTAGTACTAAAATAGAGGCATTGAGAGAAGAAATTAGATTTATGGTTGAAAGGGATGGTTCAGCAAAAGCAATTGTTTTTAGCCAGTTCACGTCATTCTTGGATCTCATAAACTACTCCTTGCAAAAGTCAGGTGTATCTTGCGTTCAATTGAATGGAAGCATGACAATGGGTGCTCGGGATGTTGCTATTAAGAAATTTACTGATGACCCAGAGTGCAAAATTTTTCTCATAAGCTTGAAAGCCGGAGGTGTTGCCCTTAATTTGACCGTCGCGTCTCATGTTTTCCTCATGGATCCTTGGTGGAACCCTGCAGTGGAGCGTCAGGCACAGGACAGAATTCACCGGATAGGGCAATACAAACCAATCAGAATTGTGAGATTTGTCATCGAAAACACAATTGAGGAGAGGATCTTGAAACTACAAGAGAAGAAGGAACTAGTATTTGAAGGGACTATAGGCAGCTCTTCCGAGGCTCTAGGGAAGTTGACGGTGGCTGACTTAAGATTTCTCTTTGCTAACTAA 2670 0.4071 MELRSRRRVSDDNDSADRKGKKPMIDDTDGKIDIDTDEDDHAVSLKSDSDYEAEDLGGNFPFDLNQDPTLSVSDFDGEDNDSDFSDGSESLSKRIMAQSRKRGRKSKIGIRDFSDLDALGRVFEENELPNVTWKTKAKKTKKGDPKPVLLWHAWKEEHERWIDQNLLEDVTLDQSEVMNETAEASSDLIVPLLRYQREWLAWALKQESSVTRGGILADEMGMGKTIQAIALVLAKRELQQMSCESDEQSHSPGSSKVLPVIKGTLVICPLVAVNQWGSEIDRFTLKGSTKVLIYHGPKRENFTEQFSEYDFVITTYSTVESEYRKHVMPPKEKCPYCGKLYKPSKLDIHLKYHCGPNAIKTSKQSKQSKKNKSGQSSKMDGELKHNSIKKKKGEMCLGVEGNEKSFLHTVKWQRIILDEAHFIKSRHCNTTKAVLALESSYKWALSGTPLQNRVGELYSLVRFLQIVPFSYNLCKDCDCRILDHSSSKECPNCPHSSVRHFCWWNKNIATPIQTHGYGNSGKRAMILLKNKILKSIVLRRTKIGRAADLELPPRIVSLRRDSLDIKEQDYYESLYNESQAQFNTYVEANTVTNNYAHIFDLLTRLRQAVDHPYLVVYSPTATALKGENLVSNGEKECGLCHDTVEDPVVTSCQHTFCKGCLIDFSGSLGRVSCPSCSTLLTVDLTSNKDAVVNKTTIKGFRSSSILNRIQIENFQTSTKIEALREEIRFMVERDGSAKAIVFSQFTSFLDLINYSLQKSGVSCVQLNGSMTMGARDVAIKKFTDDPECKIFLISLKAGGVALNLTVASHVFLMDPWWNPAVERQAQDRIHRIGQYKPIRIVRFVIENTIEERILKLQEKKELVFEGTIGSSSEALGKLTVADLRFLFAN 889
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g01334 889 SMART ultradead3 188 485 IPR014001 -
Trre7g01334 889 SMART ring_2 637 676 IPR001841 -
Trre7g01334 889 Pfam Zinc finger, C3HC4 type (RING finger) 636 676 - -
Trre7g01334 889 MobiDBLite consensus disorder prediction 1 93 - -
Trre7g01334 889 Gene3D - 194 334 IPR038718 -
Trre7g01334 889 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 633 703 IPR013083 -
Trre7g01334 889 Gene3D - 345 555 IPR038718 -
Trre7g01334 889 ProSiteProfiles Zinc finger RING-type profile. 637 677 IPR001841 -
Trre7g01334 889 Gene3D - 556 887 IPR027417 -
Trre7g01334 889 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 715 879 IPR001650 -
Trre7g01334 889 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 549 888 IPR027417 -
Trre7g01334 889 ProSitePatterns Zinc finger RING-type signature. 652 661 IPR017907 -
Trre7g01334 889 MobiDBLite consensus disorder prediction 1 53 - -
Trre7g01334 889 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 57 888 - -
Trre7g01334 889 Pfam Helicase conserved C-terminal domain 719 833 IPR001650 -
Trre7g01334 889 Coils Coil 706 726 - -
Trre7g01334 889 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 181 540 IPR027417 -
Trre7g01334 889 CDD DEXDc_SHPRH-like 192 540 - -
Trre7g01334 889 SUPERFAMILY RING/U-box 633 681 - -
Trre7g01334 889 CDD SF2_C_SNF 717 844 - -
Trre7g01334 889 Pfam SNF2-related domain 207 615 IPR000330 GO:0005524|GO:0140658
Trre7g01334 889 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 205 467 IPR014001 -
Trre7g01334 889 SMART helicmild6 750 833 IPR001650 -
Trre7g01334 889 MobiDBLite consensus disorder prediction 361 384 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g01334 Trre-Chr7 9680160 9687270 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g01334 122 887 RAD5 or RAD16-like Gene Family AT1G05120 65.031 0.0 1048
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Trre7g01334 SNF2_N 1.1e-48 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g01334 K15083 - gmx:100786366 1198.73