Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g01310 ATGTTTCAGTCAAACTTGATGGAAGCTGGTCAGTTTCATCCATTAGAGATGATGCAAAACACTTCAGAAAGTGATGTTCCTCGAATCCGTGAAGATGAATGTTTTGAAAGTGCCACAAAATCTTGCAGTGAAAATCATGAAGGTGGTGCTGCTTCTGGTGAAGACCAAGAACCACGTCCCAAAAGAAAACGTTATCACCGCCACACTCAGCATCAGATCCAAGAAATGGAAGCTTTCTTTAAGGAATGTCCACACCCAGATGACAAGCAAAGGAAGGAGCTGAGCAGAGAATTAGGGTTAGAGCCATTGCAAGTTAAGTTTTGGTTCCAAAACAAAAGAACTCAAATGAAGACACAACATGAGCGATCCGAGAATTCGCAGCTTAGAGCAGAAAATGAAAAGCTTAGAACAGATAACATGAGGTATAGAGAAGCTCTTAGCAATGCTTCATGTCCTAATTGTGGTGGTCCTACAGCTATAGGTGAAATGTCTTTTGATGAACATCATTTGAGGCTTGAAAATGGAAGGCTAAGAGAAGAGATTGATCGAATTTCAGCAATCGCAGCCAAGTACGTAGGAAAGCCGGTGGTAAACTACTCAAACATTTCACCATCTCTCCCACCTCGTCCAGAAATCGGTTTTGTTGGTAACCAACAAGGAATTGGTGGTATGGAAATGTTTGGAACAAGCGGAGATATTCTAAGGTCAATCAGTGGACCAACTGAAGCAGACAAACCAATAATAATAGAATTAGCTGTTGCAGCTATGGAAGAACTCATTGGAATGGCACAAATGGGTGATCCACTTTGGTTAAATACTACCCTTGATGGAGCTGGTACTGTTCTTAATGAAGATGAATATGTTAGGTCATTTCCTCGCGGAATTGGACCTAAACCTAATGGATTTAAGTGTGAAGCTTCTAGAGAAACTAGTGTTGTTATCATGAATCATGTTAGCCTTGTTGAGATTCTCATGGATGTGAACCAATGGTCAACAGTATTTGCTGGTATTGTTTCAAGAGCTATGACTGTGGAAGTGTTGTCAACTGGGGTGGCAGGAAACTACAATGGTGCTTTACAAGTGATGACAGCAGAGTTTCAAGTTCCATCACCACTTGTGCCAACTCGAGAGAGTTACTTTGTAAGGTATTGCAAACAACATACTGATGGGACATGGGCAGTTGTCGATGTTTCTTTGGATAATTTGCGCCCTAGCCCTTCATCTAGATGTAGAAGAAGGCCTTCTGGTTGCTTAATTCAAGAGATGCCAAATGGCTACTCCAAGGTGACATGGGTTGAGCATGTAGAAGTTGATGATAGAGGTGTTCATAATCTATACAAGCAACTTGTTACCACTGGACATGCATTTGGTGCAAAACGTTGGGTTGCAACTTTAGATCGACAATGTGAAAGACTTGCTAGCTCCATGGCAACAAACATTCCTACCGTAGATGTTGGCGTGATAACAAACCAAGAAGGGAGGAAGAGTATGATGAAACTAGCAGAGAGAATGGTGATAAGTTTTTGTGGTGGAGTGAGTGCTTCAACAGCACATACATGGACAACATTATCTGGAACAGGAGCTGATGATGTCAGAGTGATGACACGTAAGAGTGTTGATGATCCTGGAAGACCTCCTGGTATTGTTCTTAGTGCTGCTACTTCTTTTTGGCTTCCTGTTCCACCTAAACAAGTCTTTGATTTTCTTCGTGATGAAAACTCAAGAAATGAGTGGGATATTCTTTCCAATGGTGGAGTAGTCCAAGAAATGGCACACATTGCAAATGGAAGAGATACTGGAAATTGTGTGTCACTCTTAAGAGTTAATAGTGCAAATTCAAGTCAGAGCAACATGTTAATATTACAAGAGAGTCTAACAGATTCAACAGGTTCATTTGTGATCTATGCACCAGTAGACATTGTTGCTATGAATGTAGTTCTAAATGGAGGAGATCCAGATTATGTAGCACTTCTTCCATCAGGATTTGCTATACTTCCTGATGGAAATGCAATTGGAAATGGTGAAAATGGAGGACAAGCTGGTGGCGGCGGTGGCGGTGGTGGAGGATCACTTTTGACTGTTGCATTTCAAATATTGGTTGATTCTGTTCCAACTGCTAAACTTTCTCTTGGATCTGTTGCTACTGTTAATAGTCTTATTGCTTGTACTGTTGAGAGAATCAAAGCTTCTTTGTCTGGTGAAGGTGCTGCTTGA 2214 0.4124 MFQSNLMEAGQFHPLEMMQNTSESDVPRIREDECFESATKSCSENHEGGAASGEDQEPRPKRKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQHERSENSQLRAENEKLRTDNMRYREALSNASCPNCGGPTAIGEMSFDEHHLRLENGRLREEIDRISAIAAKYVGKPVVNYSNISPSLPPRPEIGFVGNQQGIGGMEMFGTSGDILRSISGPTEADKPIIIELAVAAMEELIGMAQMGDPLWLNTTLDGAGTVLNEDEYVRSFPRGIGPKPNGFKCEASRETSVVIMNHVSLVEILMDVNQWSTVFAGIVSRAMTVEVLSTGVAGNYNGALQVMTAEFQVPSPLVPTRESYFVRYCKQHTDGTWAVVDVSLDNLRPSPSSRCRRRPSGCLIQEMPNGYSKVTWVEHVEVDDRGVHNLYKQLVTTGHAFGAKRWVATLDRQCERLASSMATNIPTVDVGVITNQEGRKSMMKLAERMVISFCGGVSASTAHTWTTLSGTGADDVRVMTRKSVDDPGRPPGIVLSAATSFWLPVPPKQVFDFLRDENSRNEWDILSNGGVVQEMAHIANGRDTGNCVSLLRVNSANSSQSNMLILQESLTDSTGSFVIYAPVDIVAMNVVLNGGDPDYVALLPSGFAILPDGNAIGNGENGGQAGGGGGGGGGSLLTVAFQILVDSVPTAKLSLGSVATVNSLIACTVERIKASLSGEGAA 737
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g01310 737 Gene3D - 291 468 IPR023393 -
Trre7g01310 737 CDD homeodomain 61 120 IPR001356 GO:0003677
Trre7g01310 737 Pfam START domain 251 471 IPR002913 GO:0008289
Trre7g01310 737 ProSiteProfiles 'Homeobox' domain profile. 59 119 IPR001356 GO:0003677
Trre7g01310 737 SUPERFAMILY Homeodomain-like 53 119 IPR009057 -
Trre7g01310 737 FunFam Homeobox-leucine zipper protein HDG1 48 135 - -
Trre7g01310 737 FunFam Homeobox-leucine zipper protein GLABRA 2 250 470 - -
Trre7g01310 737 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 61 731 IPR042160 -
Trre7g01310 737 CDD START_ArGLABRA2_like 245 470 - -
Trre7g01310 737 MobiDBLite consensus disorder prediction 25 40 - -
Trre7g01310 737 SUPERFAMILY Bet v1-like 241 473 - -
Trre7g01310 737 SUPERFAMILY Bet v1-like 490 728 - -
Trre7g01310 737 ProSitePatterns 'Homeobox' domain signature. 94 117 IPR017970 GO:0000981|GO:0006355
Trre7g01310 737 MobiDBLite consensus disorder prediction 1 70 - -
Trre7g01310 737 ProSiteProfiles START domain profile. 241 474 IPR002913 GO:0008289
Trre7g01310 737 Coils Coil 118 145 - -
Trre7g01310 737 Gene3D - 49 136 - -
Trre7g01310 737 SMART START_1 250 471 IPR002913 GO:0008289
Trre7g01310 737 Pfam Homeodomain 62 117 IPR001356 GO:0003677
Trre7g01310 737 SMART HOX_1 60 123 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g01310 Trre-Chr7 9493979 9499261 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g01310 1 736 Homeobox Transcription Factor Family AT1G05230 76.819 0.0 1143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Trre7g01310 START 5.6e-58 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g01310 K09338 - gmx:100782260 1261.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre7g01310 7 9493979 9499261 Trre7g01310 7 9493979 9499261 ECH
Trre11g03926 11 52517394 52523386 Trre7g01310 7 9493979 9499261 PCT