Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g01274 ATGAGGAGAGGTCGTGTTCTTGGTGAAAATGAAAACCAAACTTTTGGGCCCGATATAAAAGCAGTATATTGGATATTGGGTTGCCTTGTGTTTTTTAATGTTGCATATTGGGTGTACTTCGCTATTAGAAAATGGATAACATCTCAGAATACTCCTAGAGTTGAGCAAATTGAAATGACTCATGCATCACAAAATGCAGAAACTTTGATTCCAACAGCAGCAGCAACAACACCACATAATAGATCGGTGCATGTGAGTGAAGTTTTATACAAGACATCCATTACTCTTGCGTTTAATCAAAAAGCTTGTGCTATATGTTTGGAGGAATATCTAAACAATGAAAAACTATACATGTTTGTATGTGGTCATGCTTTCCACAAGGATTGTATAACCACATATTTACGGGAAAATTATATAACTTGTCCGGTATGCAGATGGGTAGTGTAA 447 0.3624 MRRGRVLGENENQTFGPDIKAVYWILGCLVFFNVAYWVYFAIRKWITSQNTPRVEQIEMTHASQNAETLIPTAAATTPHNRSVHVSEVLYKTSITLAFNQKACAICLEEYLNNEKLYMFVCGHAFHKDCITTYLRENYITCPVCRWVV 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g01274 148 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 49 148 IPR013083 -
Trre7g01274 148 SMART ring_2 103 144 IPR001841 -
Trre7g01274 148 Pfam Ring finger domain 102 145 IPR001841 -
Trre7g01274 148 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF103 97 146 IPR042494 GO:0004842|GO:0016567
Trre7g01274 148 SUPERFAMILY RING/U-box 102 148 - -
Trre7g01274 148 ProSiteProfiles Zinc finger RING-type profile. 103 145 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g01274 Trre-Chr7 9149184 9149630 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g01274 92 145 C3H Transcription Factor Family AT2G15530 40.741 2.00e-09 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g01274 K15692 K15695 mcaf:127738453 62.3882