Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g01266 ATGTTAGTGAAAAGCCAAAATAAAGGGGAGGGACTGAAGTCCCTCGCCGATACATTGGCGAAATGGAAAGAATACAATGCACGGATTGAATCGAGCGGGGAAGCTGCGAAGCCAGTTAGGAAAGTTCCTGCCAAGGGATCGAAAAAAGGGTGTATGAAAGGTAAAGGAGGACCCGAGAATTCGCGCTGTAATTACAGAGGTGTTAGGCAAAGGACTTGGGGAAAATGGGTGGCTGAAATTAGGGAGCCAAACAGAGGAAATAGGCTCTGGTTAGGTACATTTCCAAATGCGGTTGCAGCTGCTCTTGCTTATGACGAAGCAGCGCGGGCAATGTATGGTGCTTGCGCGCGCCTGAACTTTCCTAATGTAGAAGTATCCAATTTCTCTCAGCTGGAATCTTTGAAAGATTCTCCAAATCCAGATCAATCTGGTTTTGTAAAGACAGCATTGGAGAATACCGAGTCCATGATATCGCCAGATAACGCTTGTGTAGATGCAGCCGAGGATGTTGACATGAAACATCTTTCCTTATCCTTAAGTGTGACCGTGAATCACGAGGAAAAAGAGGGTGATTCGATGACTAGTTGA 588 0.4592 MLVKSQNKGEGLKSLADTLAKWKEYNARIESSGEAAKPVRKVPAKGSKKGCMKGKGGPENSRCNYRGVRQRTWGKWVAEIREPNRGNRLWLGTFPNAVAAALAYDEAARAMYGACARLNFPNVEVSNFSQLESLKDSPNPDQSGFVKTALENTESMISPDNACVDAAEDVDMKHLSLSLSVTVNHEEKEGDSMTS 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g01266 195 Pfam AP2 domain 63 113 IPR001471 GO:0003700|GO:0006355
Trre7g01266 195 FunFam Ethylene-responsive transcription factor 2 63 122 - -
Trre7g01266 195 CDD AP2 63 123 IPR001471 GO:0003700|GO:0006355
Trre7g01266 195 PRINTS Ethylene responsive element binding protein signature 65 76 IPR001471 GO:0003700|GO:0006355
Trre7g01266 195 PRINTS Ethylene responsive element binding protein signature 87 103 IPR001471 GO:0003700|GO:0006355
Trre7g01266 195 ProSiteProfiles AP2/ERF domain profile. 64 121 IPR001471 GO:0003700|GO:0006355
Trre7g01266 195 Gene3D AP2/ERF domain 64 123 IPR036955 GO:0003700|GO:0006355
Trre7g01266 195 MobiDBLite consensus disorder prediction 31 64 - -
Trre7g01266 195 SUPERFAMILY DNA-binding domain 64 121 IPR016177 GO:0003677
Trre7g01266 195 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 4 153 - -
Trre7g01266 195 SMART rav1_2 64 127 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g01266 Trre-Chr7 9026682 9027269 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g01266 2 134 AP2-EREBP Transcription Factor Family AT2G40350 55.474 6.87e-51 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trre7g01266 AP2 5.8e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g01266 - K09286 gmx:100499747 270.396
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g03971 11 52965120 52968367 Trre7g01266 7 9026682 9027269 PCT