Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g01257 ATGTTGTCTATTTTCTATTTCTGCTTAATAATTTTCACCTCTTTTAAGCATTGTTTAGCTAGAGATACCATAACCATAAACAACTTACTAAGAGATGGAGAAGAACATACTCTCATTTCAGAAGGAGAAATTTTTGAACTTGGATTTTTCACACCAAATGAAAGCTCTTTTGGTTATAGAAAAAGATATGTTGGAATTTGGTACTATAATTTAACTCCAAAAACAGTTGTTTGGGTTGCAAATAGAGACAACCCAGTTCAAGATTCTAGTGGCACTTTTGTCATTTCACAAAATGGAAATCTCATGATTCTGGATAGTACTAGAAAATCTTACTGGAGTACAAATCTTGAAACATCACCATCATCTTCATTACATAGGAAAGTTAAACTATTAGACAATGGAAACCTTATTGTATTCGACGAAGAACAAGAACAAGAACAAGGACAAGGACAAGGAAAAGTGAAGATTCTATGGCAGAGTTTTGACAATCCAACAGATACATTTCTTCCAGGAATGAAAATGGATGAAAGTTTATCATTAACTTCATGGAGAAGTAATGAAGAACCTGCATCAGGTAACTTCACTTTCGAACAAGACGAAAAAGAGAATCAATATATTATATGGAAAAGATCTATTAGGTATTGGAAAAGTAGTGTATCAGGAAAATTTGTTGGAACAGGTGAAATGTCTTCAGCAATATCTTACCTTTTGTCAAATTTCACTTTGAAAATTTCACCAAACAACACTGTTCCTTTTCTTACTTCATCACTTTATAGCAACACAAGGTTGGTTATGACTTATTGGGGTCAACTTAAGTATCTAAAGATGGATTCTGAGAAAAAATGGTTAATGGTTTGGGTTGAACCAAGAGATAGATGCAGTGTTTTCAATGCATGTGGAAATTTTGGTAGCTGTAATAGTAAATATGATTCAATGTGTAAGTGTTTACCTGGATTTAAGGCGAATTCGATCGAAAGTTGGAGAGGTGGAGATTTTTCAGGGGGGTGTAGTAGGAAAACTAATGTGTGTGGTGAGAATGCTAAGAGTGATACATTTTTGAGATTAAGAATGATGAAAGTTGGGAATCCTGATGCTGAGTTTAATGCTAAGAGTGAAGAGGAATGTAAATTGGAGTGTGTTAATAATTGTCAGTGTTATGCTTATTCATATGAAGATATTGAAAAGGTTGCAAGGGTTGGTGATAGTGGTGATCCTGTTTGTTGGATTTGGTATGAGGATTTGGATAATCTTGAAGAAGAGTATGATGGTGGTTGTGATCTCAATGTTAGAGTTGCATTTTCTGATATAGAATCCACTAGCAGAAGTTGTGGAACTTGTGGCACAAACTTCATTCCATATCCCCTTAGCACAGGACAACATTGTGGTGACCAAAAGTACTTCAATTTTCACTGCAATACTACAAGTGGTGAGCTTGAATTTGATACTCCTGCAGGAACTTATCAAGTCATAAGTATAAATCAAGAAGCTCAAAAATTCTTAATCCATCAAAAAAATGTACTTAACTGTGAGAGTCAAAATTCTTTATTTCTCAATAAGTCATTTCCATTTCATCTTACTGGAAATTGCTATGTTGATCCAATCACATTTAGTTCTAATGCTCCACTAAAACATGGAGTAGAAATTGAATTAAGATGGGATTCTCCGCTAGAGCCTATTTGTTCTTCATTGTTGGATTGCAAGGATTGGCCAAACTCAACTTGCAATACTACAAATGATGGAAAGAAGAGATGTCTTTGCAATAACAACTTTCTTTGGGATGGCTTCAAACTAAATTGTACTCAAGAAGGCGAAAGCTACAAAACAAAACGGCATATGTCTTCAGCCGTGATCATTGTACTGATATTAGCACCTGTGATTCTCTTGATTATTCTGTCAAGTACGGTTGCATGTACTTATGTGAGAAAAAGAAGACAGTCTAAGACACAAGAAACCAAAGGATATGTTCAAAAACACTCAGGTCTGAACTTGTATGACAGTGAGAGATATGTTAGGGACTTAATTGAATCTGGTAGAATGAAAGAAGACGATGCACAAGCCGTAGATATTCCGCATTTTCATCTTGAGAGTATACTTGATGCTACTAATAACTTTGCAAGTGCAAACAAGCTTGGACAAGGTGGTTTTGGTCCTGTCTACAAGGGGAAATTTCAAGGAGGACAAGAAATAGCGGTGAAAAGACTTTCAAGTTGTTCTGGACAAGGTTTCGAGGAGTTTAAGAATGAAGTTGTGTTGATCGCGAAGCTTCAACATCGAAACCTAGTTCGACTTCTAGGCTACTGTGTTGAAGGAGACGAAAAGATGTTAGTATATGAGTATATGCCAAATAGAAGCTTGGATGGTTTCATTTTTGACAAAAAGCGGTGTGTTTTACTAGACTGGGATACGCGATTCAAGATTATTTTGGGTATTGCTCGAGGACTTCTTTATTTGCATGAAGATTCTAGGTTGAGGATTATTCATAGAGATTTAAAAGCAAGCAATATTCTACTAGATGAAGAGAAGAATCCTAAAATTTCAGACTTTGGCTTAGCAAGGATATTTGGAGGAAAAGAAACGGTAGCGAACACAGAAAGAGTGGTTGGAACATATGGTTACATGTCTCCTGAGTATGCACTTGATGGACATTTTTCAGTGAAGTCTGATGTTTTCAGTTTTGGTGTTGTGGTACTTGAGATTATTAGTGGAAAAAGAAACACCGGATTTTATCAAGTAGAACATGAATTGAGCCTTCTAGGATATGCATGGCATTTGTGGAAAGTAGGTAGGGCATTGGATTTCATGGACCAAACATTATGTGAAACATGCAAAGCAGAAGAATGCTTGAAATGTTTGAATATGGGGCTACTATGCTTACAAGAAGACCCAAATGAACGTCCAAACATGTCAAATGTTGTGTTTATGCTAGGAAGTGAATCTAATACTCTTCCAACTCCTAAGGAACCGGCCTTTGTTATTAGAAGATGTCCTTCAAGCAGAGCATCTACATCTAGTAAAATGGAAACTTTTTCACGTAATGAATTGACTGTCACTTTGGAAAATGGAAGGTAG 3069 0.3587 MLSIFYFCLIIFTSFKHCLARDTITINNLLRDGEEHTLISEGEIFELGFFTPNESSFGYRKRYVGIWYYNLTPKTVVWVANRDNPVQDSSGTFVISQNGNLMILDSTRKSYWSTNLETSPSSSLHRKVKLLDNGNLIVFDEEQEQEQGQGQGKVKILWQSFDNPTDTFLPGMKMDESLSLTSWRSNEEPASGNFTFEQDEKENQYIIWKRSIRYWKSSVSGKFVGTGEMSSAISYLLSNFTLKISPNNTVPFLTSSLYSNTRLVMTYWGQLKYLKMDSEKKWLMVWVEPRDRCSVFNACGNFGSCNSKYDSMCKCLPGFKANSIESWRGGDFSGGCSRKTNVCGENAKSDTFLRLRMMKVGNPDAEFNAKSEEECKLECVNNCQCYAYSYEDIEKVARVGDSGDPVCWIWYEDLDNLEEEYDGGCDLNVRVAFSDIESTSRSCGTCGTNFIPYPLSTGQHCGDQKYFNFHCNTTSGELEFDTPAGTYQVISINQEAQKFLIHQKNVLNCESQNSLFLNKSFPFHLTGNCYVDPITFSSNAPLKHGVEIELRWDSPLEPICSSLLDCKDWPNSTCNTTNDGKKRCLCNNNFLWDGFKLNCTQEGESYKTKRHMSSAVIIVLILAPVILLIILSSTVACTYVRKRRQSKTQETKGYVQKHSGLNLYDSERYVRDLIESGRMKEDDAQAVDIPHFHLESILDATNNFASANKLGQGGFGPVYKGKFQGGQEIAVKRLSSCSGQGFEEFKNEVVLIAKLQHRNLVRLLGYCVEGDEKMLVYEYMPNRSLDGFIFDKKRCVLLDWDTRFKIILGIARGLLYLHEDSRLRIIHRDLKASNILLDEEKNPKISDFGLARIFGGKETVANTERVVGTYGYMSPEYALDGHFSVKSDVFSFGVVVLEIISGKRNTGFYQVEHELSLLGYAWHLWKVGRALDFMDQTLCETCKAEECLKCLNMGLLCLQEDPNERPNMSNVVFMLGSESNTLPTPKEPAFVIRRCPSSRASTSSKMETFSRNELTVTLENGR 1022
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g01257 1022 Pfam PAN-like domain 346 416 IPR003609 -
Trre7g01257 1022 Pfam S-locus glycoprotein domain 220 322 IPR000858 GO:0048544
Trre7g01257 1022 ProSiteProfiles EGF-like domain profile. 289 325 IPR000742 -
Trre7g01257 1022 Gene3D Transferase(Phosphotransferase) domain 1 780 985 - -
Trre7g01257 1022 SUPERFAMILY alpha-D-mannose-specific plant lectins 76 186 IPR036426 -
Trre7g01257 1022 SMART blect_4 27 164 IPR001480 -
Trre7g01257 1022 Pfam D-mannose binding lectin 75 176 IPR001480 -
Trre7g01257 1022 ProSitePatterns Serine/Threonine protein kinases active-site signature. 825 837 IPR008271 GO:0004672|GO:0006468
Trre7g01257 1022 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 123 1001 - -
Trre7g01257 1022 CDD STKc_IRAK 710 975 - -
Trre7g01257 1022 SMART ntp_6 347 431 IPR003609 -
Trre7g01257 1022 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 669 779 - -
Trre7g01257 1022 Pfam Protein tyrosine and serine/threonine kinase 707 973 IPR001245 GO:0004672|GO:0006468
Trre7g01257 1022 ProSiteProfiles Protein kinase domain profile. 704 990 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre7g01257 1022 CDD PAN_AP_plant 343 432 - -
Trre7g01257 1022 SUPERFAMILY Protein kinase-like (PK-like) 687 975 IPR011009 -
Trre7g01257 1022 Gene3D - 17 162 IPR036426 -
Trre7g01257 1022 ProSiteProfiles PAN/Apple domain profile. 343 432 IPR003609 -
Trre7g01257 1022 ProSiteProfiles Bulb-type lectin domain profile. 21 151 IPR001480 -
Trre7g01257 1022 Gene3D Phosphorylase Kinase; domain 1 668 779 - -
Trre7g01257 1022 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 16 161 - -
Trre7g01257 1022 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 780 983 - -
Trre7g01257 1022 CDD B_lectin 27 164 IPR001480 -
Trre7g01257 1022 SMART serkin_6 704 974 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g01257 Trre-Chr7 8947078 8951351 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g01257 682 993 Receptor kinase-like Gene Family AT4G23230 58.934 2.30e-125 394
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trre7g01257 PK_Tyr_Ser-Thr 2.4e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g01257 - - gmx:100775297 1671.75