Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g01246 ATGAATTATCTAAGGCCTAATATCAAAAGAGGAAATTTCTCTCAACAAGAAGAAGAATTGATTATCACAATGCATAAAAAGCTTGGCAATAGATGGTCAACTATTTCGGCGGAATTACCTGGAAGAACAGATAATGAAGTGAAGAACCATTGGCATCACTACAAGAAATTTGACTTGTACCTACGGATAAAATCCGTCACTAAAGGTCAAAAACCGTAG 219 0.3562 MNYLRPNIKRGNFSQQEEELIITMHKKLGNRWSTISAELPGRTDNEVKNHWHHYKKFDLYLRIKSVTKGQKP 72
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g01246 72 SMART sant 9 57 IPR001005 -
Trre7g01246 72 PANTHER MYB DOMAIN PROTEIN 55 1 59 - -
Trre7g01246 72 Gene3D - 12 54 - -
Trre7g01246 72 CDD SANT 12 55 IPR001005 -
Trre7g01246 72 ProSiteProfiles Myb-like domain profile. 5 55 IPR001005 -
Trre7g01246 72 Pfam Myb-like DNA-binding domain 10 55 IPR001005 -
Trre7g01246 72 SUPERFAMILY Homeodomain-like 1 57 IPR009057 -
Trre7g01246 72 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 5 59 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g01246 Trre-Chr7 8867108 8867549 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g01246 1 72 MYB Transcription Factor Family AT3G23250 56.410 3.25e-25 91.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Trre7g01246 Myb_DNA-binding 3.8e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g01246 K09422 - gmx:778087 105.531