Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g01242 ATGCATGCAAAGCTTGGCAATAGATGGTCAACCATAGCAGCGAATTTACCTGGAAGAACTGATAACGAAGTGAAGAACCATTGGCATACTTCCCTAAAAAAGAAAGTTCAAAACAACACATCAATCACAAATGAAGAAATGAAATCAAAACACATTGAATCCACACAAGAAAGGGTTATCTCCTTTTCCCAAGTTACTACTCCAACTAGTTCCCAAGATACCAATGGCCCATTATCCCCATTTTCATCATCAAGTGAATTCTCTTCCACAACATATTCAGATCACAATTCCATTCATGATTTGGATGACTTGAGTTTTGTAGATGCTTTTATTGAATCTATGGATCAAAGTTTTTTGTTGGATGACCTTACCAACACACCAAATGGAATGGTGCAAAATAATACTAATTGTGCTTTTCAAAATCAAGATACTTCTTTAGAGTCTCCAAATCATTCGTCCAATGAAAGTAATTTGGTTCTGGATAATGATTTTGGCAGCTTTGTAGAAGTGTACAATGAGTCAACAGTTGATAATTTTTGGACACAAGCATATGAAGTTGACATGTCCCTTGTTCCAAACAACATGCTGACAACTTTGCCGATGGAATCAGAATATTTTTCTGAAGTATATGATGAGGATCTATGGAGTTGA 651 0.3579 MHAKLGNRWSTIAANLPGRTDNEVKNHWHTSLKKKVQNNTSITNEEMKSKHIESTQERVISFSQVTTPTSSQDTNGPLSPFSSSSEFSSTTYSDHNSIHDLDDLSFVDAFIESMDQSFLLDDLTNTPNGMVQNNTNCAFQNQDTSLESPNHSSNESNLVLDNDFGSFVEVYNESTVDNFWTQAYEVDMSLVPNNMLTTLPMESEYFSEVYDEDLWS 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g01242 216 SUPERFAMILY Homeodomain-like 2 39 IPR009057 -
Trre7g01242 216 MobiDBLite consensus disorder prediction 65 86 - -
Trre7g01242 216 Gene3D - 1 60 - -
Trre7g01242 216 CDD SANT 1 32 IPR001005 -
Trre7g01242 216 PANTHER MYB DOMAIN PROTEIN 55 1 157 - -
Trre7g01242 216 ProSiteProfiles Myb-like domain profile. 1 32 IPR001005 -
Trre7g01242 216 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 36 IPR017930 -
Trre7g01242 216 Pfam Myb-like DNA-binding domain 2 30 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g01242 Trre-Chr7 8831584 8832588 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g01242 1 57 MYB Transcription Factor Family AT5G06100 47.368 1.80e-14 69.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Trre7g01242 Myb_DNA-binding 8.7e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g01242 K09422 - gmx:100777107 173.711