Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g01241 ATGGCAAGAACTCCTTCATGTGACAAAAGTGGAATGAGGAAAGGAACTTGGACTGCTGAAGAAGATAGGAAATTAATAGCTTATGTAACTAGATATGGTTGTTGGAATTGGCGCCAACTACCTAAATTTGCAGGTCTTGCAAGATGTGGGAAGAGTTGTAGATTAAGGTGGATGAATTATCTAAGGCCTAATATCAAAAGAGGAAACTACAGTCAACAAGAAGAAGAGTTGATTATCTCAATGCATGCAAAGCTTGGCAATAGATGGTCAACCATAGCAGCGAATTTACCTGGAAGAACTGATAACGAAGTGAAGAACCATTGGCATACTTCCCTAAAAAAGAAAGTTCAAAACAACACATCAATCACAAATGAAGAAATGAAATCAAAACACATTGAATCCACACAAGAAAGGGTTATCTCCTTTTCCCAAGTTACTACTCCAACTAGTTCCCAAGATACCAATGGCCCATTATCCCCATTTTCATCATCAAGTGAATTCTCTTCCACAACATATTCAGATCACAATTCCATTCATGATTTGGATGACTTGAGTTTTGTAGATGCTTTTATTGAATCTATGGATCAAAGTTTTTTGTTGGATGACCTTACCAACACACCAAATGGAATGGTGCAAAATAATACTAATTGTGCTTTTCAAAATCAAGATACTTCTTTAGAGTCTCCAAATCATTCGTCCAATGAAAGTAATTTGGTTCTGGATAATGATTTTGGCAGCTTTGTAGAAGTGTACAATGAGTCAACAGTTGATAATTTTTGGACACAAGCATATGAAGTTGACATGTCCCTTGTTCCAAACAACATGCTGACAACTTTGCCGATGGAATCAGAATATTTTTCTGAAGTATATGATGAGGATCTATGGAGTTGA 891 0.3636 MARTPSCDKSGMRKGTWTAEEDRKLIAYVTRYGCWNWRQLPKFAGLARCGKSCRLRWMNYLRPNIKRGNYSQQEEELIISMHAKLGNRWSTIAANLPGRTDNEVKNHWHTSLKKKVQNNTSITNEEMKSKHIESTQERVISFSQVTTPTSSQDTNGPLSPFSSSSEFSSTTYSDHNSIHDLDDLSFVDAFIESMDQSFLLDDLTNTPNGMVQNNTNCAFQNQDTSLESPNHSSNESNLVLDNDFGSFVEVYNESTVDNFWTQAYEVDMSLVPNNMLTTLPMESEYFSEVYDEDLWS 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g01241 296 CDD SANT 69 112 IPR001005 -
Trre7g01241 296 CDD SANT 16 61 IPR001005 -
Trre7g01241 296 Gene3D - 14 66 - -
Trre7g01241 296 Gene3D - 68 140 - -
Trre7g01241 296 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Trre7g01241 296 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Trre7g01241 296 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Trre7g01241 296 MobiDBLite consensus disorder prediction 145 166 - -
Trre7g01241 296 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Trre7g01241 296 Pfam Myb-like DNA-binding domain 67 110 IPR001005 -
Trre7g01241 296 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Trre7g01241 296 SMART sant 66 114 IPR001005 -
Trre7g01241 296 SMART sant 13 63 IPR001005 -
Trre7g01241 296 FunFam MYB-related transcription factor 13 66 - -
Trre7g01241 296 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Trre7g01241 296 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 217 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g01241 Trre-Chr7 8831584 8832828 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g01241 1 126 MYB Transcription Factor Family AT1G06180 63.492 1.14e-57 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre7g01241 Myb_DNA-binding 3.4e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g01241 K09422 - gmx:100777107 333.183