Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g01239 ATGGTAAGAGCACCTTATTTTGATGAAAATGGAACAAAGAAAGGTGCATGGAGTGAGGAAGAGGATCAAAGGCTTATTGCTTACATTGAAAGACATGGTCATCCTAATTGGCGTCAACTTCCCAAAGTTGCCGGTTTGGCAAGATGTGGAAAAAGTTGTAGGCTACGTTGGATGAATTACTTGAGGCCAAATCTAAAACGAGGGAATTATACACAAAAGGAGCAACAAATTATCATTGAATTGCACAAAAAGCATGGAAATAAATGGTCTCTTATAGCTGAAAGTCTACCCGGAAGATCAGACAATGAAATAAAAAATTACTGGCACAGTCACCTAAAGAAAATCTCACGGCGCAATGAGACCAACCTTATTAAAGAGACTCAAAAGACAAAAACAACAACAAGTGAGGATGTTACTCATGATTCCCACCACATTTTGGAAAGTTCAACTTCAACGTCCTCTAGTCATGTGGAATTGAACATGAACTTGTATAGAAAAGAAGATTGTGTTGCTTCTTGGGAAATATGGGATGGATTCAGCAACAATTTTTGGACTGAACCATTTATTTCCGAAAATGCATTAGATCAGTATTACTCTCCCGTTTCATGGTATGGATCAGAGTCAGAGGATCCATTTTTCATATGGTAG 648 0.3796 MVRAPYFDENGTKKGAWSEEEDQRLIAYIERHGHPNWRQLPKVAGLARCGKSCRLRWMNYLRPNLKRGNYTQKEQQIIIELHKKHGNKWSLIAESLPGRSDNEIKNYWHSHLKKISRRNETNLIKETQKTKTTTSEDVTHDSHHILESSTSTSSSHVELNMNLYRKEDCVASWEIWDGFSNNFWTEPFISENALDQYYSPVSWYGSESEDPFFIW 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g01239 215 CDD SANT 69 112 IPR001005 -
Trre7g01239 215 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Trre7g01239 215 SMART sant 13 63 IPR001005 -
Trre7g01239 215 SMART sant 66 114 IPR001005 -
Trre7g01239 215 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Trre7g01239 215 CDD SANT 16 61 IPR001005 -
Trre7g01239 215 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Trre7g01239 215 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Trre7g01239 215 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Trre7g01239 215 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 152 - -
Trre7g01239 215 FunFam MYB-related transcription factor 13 66 - -
Trre7g01239 215 Gene3D - 69 115 - -
Trre7g01239 215 MobiDBLite consensus disorder prediction 128 147 - -
Trre7g01239 215 Gene3D - 7 67 - -
Trre7g01239 215 MobiDBLite consensus disorder prediction 128 144 - -
Trre7g01239 215 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Trre7g01239 215 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g01239 Trre-Chr7 8777993 8780339 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g01239 1 193 MYB Transcription Factor Family AT2G31180 46.465 1.75e-55 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre7g01239 Myb_DNA-binding 7.2e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g01239 K09422 - gmx:100782270 293.508