Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g01231 ATGAGTTGGTCTTCCTTTTATAAGACAGCCTCAAGGGTTTTTCATGAGTATCCATCTTGGTCCAAGACTCTTGTTGTATGCACATTCATTAGTGGTGGAGGTATAGTTGCATATGGTGATGGCAGAGCAGCATATAGTGATTGTGGTGATCAAAGCCCAAAAAAGAAAGTGGTGGTGCTTGGAACTGGTTGGGCTGGAACCAGTTTTGTGAAGAACATGAAAAGCTCTTCTTATGATATTCATGTGGTTTCACCTCGTAATTATTTTGCATTCACTCCTTTGCTACCAAGTGTCACTTGTGGCACAGTCGAGGCACGTAGCGTTATTGAACCAATTCGAAATATCAGCAGAAAGAGTGGTTTAGATATTGAATTCAGTGAAGCTGAATGCTATAAGATTGATCCAAAGAACAACAAAGTTTACTGCAGAGCTTCTAATCAAGACAAAAAGCTTGGTGGAATAGAAGAATTTTCCATTGATTATGATTACTTAGTAATAGCTATGGGAGGTCGTTCTAATACCTTTAACACACCCGGTGTTCAAGAGCATGCCTTCTTCTTGAAGGAAGTGGAAGATGCTTTAAGAATCCGGAAAAAAGTGATTAGCCTTTTTGAAAGAGCAAGTCTCCCTTCTGTACCGGTGGAAGAGAAGAAAAAGCTTTTGAGTTTTGTAGTTGTTGGTGGCGGTCCAACTGGTGTAGAGTTTGCCGCAGAACTACATGACTTTGTGCATGAAGATTTGTCTAAATTATATCCTTCTCTTATAGAACATGTCAAGATTACTCTCCTCGAGGCTGGCGATCATATCTTAAACATGTTTGACAAGAGAATAACAGAATTTGCCGAAGAAAAGTTCAAAAGAGATGGAATTGATGTGAAATTGGGATCTATGGTTGTGAAGGTTGGTGAAAAAGATATATCATCCAAAGAAAGAGGAAGTGGTCAAGTTGTAACTATTCCTCATGGGATGGTAGTTTGGTCAACCGGTATCGGTGCTCGTCCTGAAATTATTGATTTCATGAAGCAACTTGGCCAGATTAATCGGCGTGCATTGGTCACCGATGAATGGCTAAGGGTGGAAGGGTGCGACAACATCTATGCTCTAGGTGATTGTGCCACTATAAATCAACGTAGAGTTATGGAAGATATAGCAGTGATATTTAGCAAGGCAGACAAGGACAATTCCGGAATGTTAGATCTTAAAGAATTTCAAAACGTTGTTGACGACATTATCGAGAGGTATCCACAAGTGGAAATTTATTTAAAGAAGAATCAAATGAAAGACATGGCTACTTTGCTAAACAAATCTCTGGAAAACCCTGCAACTACTGTGGACATTGAATACTTTAAAAAAGCTGTTTCCGAAGTTGATTCTCAAATGAAAAATCTTCCTGCAACAGCTCAGGTAGCTGCTCAACAAGGAGCATATCTTGCAGACTGTTTCAATCGCATGGAATTGTGCGAGAAATATCCGGAAGGCCCTATAAGGTTTAGGGGAACAGGACGCCATCGGTTTCATGCTTTCAGGTACAAACATTTTGGACAATTTGCTCCTCTTGGTGGAGAACAAACTGCAGCTCAACTTCCAGGAGATTGGGTTTCAATTGGTCATAGCAGCCAATGGTTGTGGTATTCAGTATATGCAAGCAAACTAGTGAGCTGGAGAACAAGAGCTTTGGTGATATCCGACTGGGGAAGGAGATTTGTATTTGGCAGGGACTCAAGTGAAATATGA 1734 0.4043 MSWSSFYKTASRVFHEYPSWSKTLVVCTFISGGGIVAYGDGRAAYSDCGDQSPKKKVVVLGTGWAGTSFVKNMKSSSYDIHVVSPRNYFAFTPLLPSVTCGTVEARSVIEPIRNISRKSGLDIEFSEAECYKIDPKNNKVYCRASNQDKKLGGIEEFSIDYDYLVIAMGGRSNTFNTPGVQEHAFFLKEVEDALRIRKKVISLFERASLPSVPVEEKKKLLSFVVVGGGPTGVEFAAELHDFVHEDLSKLYPSLIEHVKITLLEAGDHILNMFDKRITEFAEEKFKRDGIDVKLGSMVVKVGEKDISSKERGSGQVVTIPHGMVVWSTGIGARPEIIDFMKQLGQINRRALVTDEWLRVEGCDNIYALGDCATINQRRVMEDIAVIFSKADKDNSGMLDLKEFQNVVDDIIERYPQVEIYLKKNQMKDMATLLNKSLENPATTVDIEYFKKAVSEVDSQMKNLPATAQVAAQQGAYLADCFNRMELCEKYPEGPIRFRGTGRHRFHAFRYKHFGQFAPLGGEQTAAQLPGDWVSIGHSSQWLWYSVYASKLVSWRTRALVISDWGRRFVFGRDSSEI 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g01231 577 Pfam Pyridine nucleotide-disulphide oxidoreductase 55 381 IPR023753 GO:0016491
Trre7g01231 577 Gene3D - 48 430 - -
Trre7g01231 577 Gene3D - 443 576 - -
Trre7g01231 577 FunFam External alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial 46 407 - -
Trre7g01231 577 SUPERFAMILY FAD/NAD(P)-binding domain 215 375 IPR036188 -
Trre7g01231 577 ProSiteProfiles EF-hand calcium-binding domain profile. 378 413 IPR002048 GO:0005509
Trre7g01231 577 PANTHER NADH DEHYDROGENASE 50 577 IPR045024 GO:0003954|GO:0006116
Trre7g01231 577 SUPERFAMILY EF-hand 372 462 IPR011992 -
Trre7g01231 577 PRINTS FAD-dependent pyridine nucleotide reductase signature 57 76 - -
Trre7g01231 577 PRINTS FAD-dependent pyridine nucleotide reductase signature 222 240 - -
Trre7g01231 577 PRINTS FAD-dependent pyridine nucleotide reductase signature 161 179 - -
Trre7g01231 577 PRINTS FAD-dependent pyridine nucleotide reductase signature 350 372 - -
Trre7g01231 577 ProSitePatterns EF-hand calcium-binding domain. 391 403 IPR018247 -
Trre7g01231 577 SUPERFAMILY FAD/NAD(P)-binding domain 54 274 IPR036188 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g01231 Trre-Chr7 8699026 8703529 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g01231 5 577 Chloroplast and Mitochondria Gene Families AT4G21490 68.739 0.0 798
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g01231 K03885 - gmx:100820044 968.378
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre7g01231 7 8699026 8703529 Trre7g01231 7 8699026 8703529 ECH