Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g01230 ATGACGATTTCTTCCTTCTTCATCACAGCCTCCAAGGCTATAAACAACCGCCCTTTCTGCTCCGGTCTTCTTCTTCTCTGCACTATCAGCGGCGGAGGTGTGGTGGCACTCTCAGAGTCACAATCAGAAGCTCAACATCCTAATATTGAAGATCATCAGCCCCGAAAAAAGAAAGTTGTGGTCCTTGGAACTGGATGGGCTGCTACCAGTTTCCTTAAGGGTTTGGATGCTTCAATGTATGATGTTCAAGTTGTTTCTCCTCGTAACTACTTTGCATTTACTCCCTTATTACCGAGTGTCACTTGTGGAACAGTTGAAGCACGGAGCATCGTAGAACCGATCCGAAACATCATTAAAAAGAGTAAAGGAGAAATAAAATTTTGGGAGGCAGAATGTGTCAAGATTAATGCTGCAGACAAAAAGGTTTTTTGTCGGTCTAATATTGAAAACTTAGTGGGAGGCGGTGATTTTTCTCTGGACTATGACTTCTTGGTTGTATCAGTAGGAGCACAAGTAAATACTTTCAATACACCTGGTGTCAAGGAGAACTGTCATTTTCTTAAGAATGTCGAGGACGCTCAAAAGATCAGACTGTCTGTGATAAATTGTCTTGAGAAGGCTGTTCTTCCTAGTCAATCTGAAGAGGAGCAAAGGTCAAATCTTCATTTTGTAATCGTTGGAGGAGGACCAACTGGTGTCGAATTTGCTGCAGAGCTGCATGATTATATCCAAGAAGATTTGATCAACTTATACCCAACTATTAAAGATAAAGTGAAGATAACGTTAATTCAATCTGGAGATCACATCTTGAATATGTTCGATGAAAGAATAAGTACGTTTGCTGAGCAGAAGTTTAGGAGAGATGGTATAGAAGTTCAAACTGGATGCCGGGTTTTGAGTGTTGATGACAAGGAGATTACAATGAAGGCGAAATCAACCGGAGTGGTTTCCTCTTTGCCACATGGATTGATTATCTGGTCCACCGGAATTTCTACTCTTCCAGTTATACGGGAATTTATGGAAGAAATTGGTCAGACTAAAAGGCATGTACTTGCAACTGATGAATGGTTGAGAGTACAGGGATGTAAAGATGTGTTTGCAATTGGTGATTGTTCATCAATAAATCAACGTAAAATCATGGATGATATCTTGGACATATTTAAGGCTGCAGACAAAAATAACTCTGGTACCTTAACTGTAGAAGAATTCGAAGAAGTGATGGATGATATAATCTTAAGATATCCTCAAGTTGAATACTATCTACAGAAGAACCATATACTTGATTTGAGGGTTCTCTGGAACGACCCAGAAGGGAATGAAAGAAAAGAAATAGACATAGAAGGGTTTAAAAGGGCCCTTTCTTTTGCAGATTCACAGGTGAAGACCCTTCCAGCAACTGCACAGGTTGCAGCTCAACAAGGTGCATATCTAGCTAGTTGCTTTAATCACGTTGATCTTTGTTTAGACCATCCAGAAGGACCTCGACGATTTTCAGGATCCGGACATCATATGTTTCGTCCCTTCCGGTATAAACATTTTGGGCAATTTGCTCCACTGGGTGGGGAGCAGGCAGCAGCAGAACTTCCTGGAGACTGGGTTTCCATTGGTCACAGCACTCAATGGCTTTGGTATTCTGTATATGCAAGCAAGCAAGTGAGCTGGCGCACACGGTATTTGGTCGTCTCTGATTGGACTAGAAAATTCATATTTGGAAGGGATTCAAGTCGAGTTTGA 1734 0.4129 MTISSFFITASKAINNRPFCSGLLLLCTISGGGVVALSESQSEAQHPNIEDHQPRKKKVVVLGTGWAATSFLKGLDASMYDVQVVSPRNYFAFTPLLPSVTCGTVEARSIVEPIRNIIKKSKGEIKFWEAECVKINAADKKVFCRSNIENLVGGGDFSLDYDFLVVSVGAQVNTFNTPGVKENCHFLKNVEDAQKIRLSVINCLEKAVLPSQSEEEQRSNLHFVIVGGGPTGVEFAAELHDYIQEDLINLYPTIKDKVKITLIQSGDHILNMFDERISTFAEQKFRRDGIEVQTGCRVLSVDDKEITMKAKSTGVVSSLPHGLIIWSTGISTLPVIREFMEEIGQTKRHVLATDEWLRVQGCKDVFAIGDCSSINQRKIMDDILDIFKAADKNNSGTLTVEEFEEVMDDIILRYPQVEYYLQKNHILDLRVLWNDPEGNERKEIDIEGFKRALSFADSQVKTLPATAQVAAQQGAYLASCFNHVDLCLDHPEGPRRFSGSGHHMFRPFRYKHFGQFAPLGGEQAAAELPGDWVSIGHSTQWLWYSVYASKQVSWRTRYLVVSDWTRKFIFGRDSSRV 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g01230 577 SMART efh_1 382 410 IPR002048 GO:0005509
Trre7g01230 577 SUPERFAMILY EF-hand 336 461 IPR011992 -
Trre7g01230 577 FunFam External alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial 48 407 - -
Trre7g01230 577 ProSitePatterns EF-hand calcium-binding domain. 391 403 IPR018247 -
Trre7g01230 577 ProSiteProfiles EF-hand calcium-binding domain profile. 378 413 IPR002048 GO:0005509
Trre7g01230 577 PANTHER NADH DEHYDROGENASE 50 577 IPR045024 GO:0003954|GO:0006116
Trre7g01230 577 SUPERFAMILY FAD/NAD(P)-binding domain 221 375 IPR036188 -
Trre7g01230 577 Gene3D - 46 404 - -
Trre7g01230 577 Gene3D - 436 577 - -
Trre7g01230 577 SUPERFAMILY FAD/NAD(P)-binding domain 56 274 IPR036188 -
Trre7g01230 577 Pfam Pyridine nucleotide-disulphide oxidoreductase 57 377 IPR023753 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g01230 Trre-Chr7 8692460 8697424 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g01230 5 577 Chloroplast and Mitochondria Gene Families AT4G21490 61.419 0.0 722
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g01230 K03885 - gmx:100793566 962.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre7g01230 7 8692460 8697424 Trre7g01230 7 8692460 8697424 ECH