Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g01223 ATGGAATGTTTAGATTCTTGCCACGGCGGAGGTGTGGTGGCACTCTCAGAGTCACAATCAGAAGCTCAACATCCTAATATTGAAGATCATCAGCCCCGAAAAAAGAAAGTTGTGGTCCTTGGAACTGGATGGGCTGCTACCAGTTTCCTTAAGGGTTTGGATGCTTCAATGTATGATGTTCAAGTTGTTTCTCCTCGTAACTACTTTGCATTTACTCCCTTATTACCGAGTGTCACTTGTGGAACAGTTGAAGCACGGAGCATCGTAGAACCGATCCGAAACATCATTAAAAAGAATTTCTCAGGAGAAATAAAATTTTGGGAGGCAGAATGTGTCAAGATTAATGCTGCAGACAAAAAGGTTTTTTGTCGGTCTAATATTGAAAACTTAGTGGGAGGCGGTGATTTTTCTCTGGACTATGACTTCTTGGTTGTATCAGTAGGAGCACAAGTAAATACTTTCAATACACCTGGTGTCAAGGAGAACTGTCATTTTCTTAAGAATGTCGAGGACGCTCAAAAGATCAGACTGTCTGTGATAAATTGTCTTGAGAAGGCTGTTCTTCCTAGTCAATCTGAAGAGGAGCAAAGGTCAAATCTTCATTTTGTAATCGTTGGAGGAGGACCAACTGGTGTCGAATTTGCTGCAGAGCTGCATGATTATATCCAAGAAGATTTGATCAACTTATACCCAACCGTTAAAGATAAAGTGAAGATAACGTTAATTCAATCTGGAGATCACATCTTGAATATGTTCGATGAAAGAATAAGTACGTTTGCTGAGCAGAAGTTTAGGAGAGATGGTATAGAAGTTCAAACTGGATGCCGGGTTTTGAGTGTTGATGACAAGGAGATTACAATGAAGGCGAAATCAACAGGAGTGGTTTCCTCTTTGCCACATGGATTGATTATCTGGTCCACCGGAATTTCTACTCTTCCAGTTATACGGGAATTTATGGAAGAAATTGGTCAGACTAAAAGGCATGTACTTGCAACTGATGAATGGTTGAGAGTACAGGGATGTAAAGATGTGTTTGCAATTGGTGATTGTTCATCAATAAATCAACGTAAAATCATGGATGATATCTTGGACATATTTAAGGCTGCAGACAAAAATAACTCTGGTACCTTAACTGTAGAAGAATTCGAAGAAGTGATGGATGATATAATCTTAAGATATCCTCAAGTTGAATACTATCTACAGAAGAACCATATACTTGATTTGAGGGTTCTCTGGAACGACCCAGAAGGGAATGAAAGAAAAGAAATAGACATAGAAGGGTTTAAAAGGGCCCTTTCTTTTGCAGATTCACAGGTGAAGACCCTTCCAGCAACTGCACAGGTTGCAGCTCAACAAGGTGCATATCTAGCTAGTTGCTTTAATCACGTTGATCTTTGTTTAGACCATCCAGAAGGACCTCGACGATTTTCAGGATCCGGACATCATATGTTTCGTCCCTTCCGGTATAAACATTTTGGGCAATTTGCTCCACTGGGTGGGGAGCAGGCAGCAGCAGAACTTCCTGGAGACTGGGTTTCCATTGGTCACAGCACTCAATGGCTTTGGTATTCTGTATATGCAAGCAAGCAAGTGAGCTGGCGCACACAGTATTTGGTCGTCTCTGATTGGACTAGAAAATTCATATTTGGAAGGGATTCAAGTCGAGTTTGA 1671 0.4087 MECLDSCHGGGVVALSESQSEAQHPNIEDHQPRKKKVVVLGTGWAATSFLKGLDASMYDVQVVSPRNYFAFTPLLPSVTCGTVEARSIVEPIRNIIKKNFSGEIKFWEAECVKINAADKKVFCRSNIENLVGGGDFSLDYDFLVVSVGAQVNTFNTPGVKENCHFLKNVEDAQKIRLSVINCLEKAVLPSQSEEEQRSNLHFVIVGGGPTGVEFAAELHDYIQEDLINLYPTVKDKVKITLIQSGDHILNMFDERISTFAEQKFRRDGIEVQTGCRVLSVDDKEITMKAKSTGVVSSLPHGLIIWSTGISTLPVIREFMEEIGQTKRHVLATDEWLRVQGCKDVFAIGDCSSINQRKIMDDILDIFKAADKNNSGTLTVEEFEEVMDDIILRYPQVEYYLQKNHILDLRVLWNDPEGNERKEIDIEGFKRALSFADSQVKTLPATAQVAAQQGAYLASCFNHVDLCLDHPEGPRRFSGSGHHMFRPFRYKHFGQFAPLGGEQAAAELPGDWVSIGHSTQWLWYSVYASKQVSWRTQYLVVSDWTRKFIFGRDSSRV 556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g01223 556 ProSiteProfiles EF-hand calcium-binding domain profile. 357 392 IPR002048 GO:0005509
Trre7g01223 556 Gene3D - 24 384 - -
Trre7g01223 556 Gene3D - 415 556 - -
Trre7g01223 556 SUPERFAMILY EF-hand 315 440 IPR011992 -
Trre7g01223 556 SUPERFAMILY FAD/NAD(P)-binding domain 34 253 IPR036188 -
Trre7g01223 556 SMART efh_1 361 389 IPR002048 GO:0005509
Trre7g01223 556 PANTHER NADH DEHYDROGENASE 28 556 IPR045024 GO:0003954|GO:0006116
Trre7g01223 556 FunFam External alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial 26 386 - -
Trre7g01223 556 SUPERFAMILY FAD/NAD(P)-binding domain 200 354 IPR036188 -
Trre7g01223 556 ProSitePatterns EF-hand calcium-binding domain. 370 382 IPR018247 -
Trre7g01223 556 Pfam Pyridine nucleotide-disulphide oxidoreductase 35 356 IPR023753 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g01223 Trre-Chr7 8661938 8667104 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g01223 4 556 Chloroplast and Mitochondria Gene Families AT4G21490 62.007 0.0 707
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g01223 K03885 - gmx:100793566 929.087