Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g01204 ATGGGTTGTTGTGTGTCAACGAGCAGTCGGAGTACTTGTAGCAGCGGGAGCAATGGAGATATGGTTACTCCATCTTGCTTAGAAATTGGATTTTGTGGGAAAAAGAGAGCGAGGAGAACTTTCTCTGATCATGTTATTTCTCTGCATCATTTATCATCATTACCTAGTCGGATTTTCACTAATGGAAAGAGTCGTGGTTCGTGCATATTTACGCAGCAGGGCCGGAAGGGAATTAATCAGGACGCCATGGTTGTGTGGGAAGATTTCATGTCCGAAGATATGATCTTTTGTGGTGTGTTTGATGGCCATGGTCCGCAAGGTCATCTTGTTGCGCGTAAAGTGAGAGATACCTTACCAGTAAAATTGCTTTCGTTTTTGCATTCTTATGAATCAAAGCGAAATGGATCTGCCAAAGCTTGTTTGAAACGGAACATGAAATCGGATGGTGGAGACTCTGAGAAGGATATTTCTTCTGAAGATAAACTAAACTCCACATGGAAAGAAGCTTTCATGAAAGCATACAAGGCCATGGACAAAGAGCTCAGTTCTCATCCAAAACTCGACTGCTTCTGTAGTGGGAGCACATCTGTGACTATAGTGAAGCAGGGTTCGAATCTCTTCATGGGATATATTGGTGATTCTCGAGCAATCATGGGATCCAAAGACAGCAATGACTCCATGGTGGCAATTCAGTTGACTGTTGATTTGAAGCCGGATTTACCAAGAGAGGCGGAAAGAATCAAGCAGTGCAAGGGTAGGGTTTTTGCTTTGCAAGATGAACCGGAAGTTTCTAGGGTATGGTTGCCTTTTGATGATGCACCGGGATTAGCAATGGCTAGAGCATTTGGAGATTTCTGCTTGAAGGAGTATGGTGTGATTTCTATACCAGAATTTTCTCACCGGCTGCTTACGGATAGAGATCAATTCATTGTTCTTGCCTCTGATGGGGTTTGGGATGTTTTAAGTAATGAGGAGGTAGTTGAGATAGTATCATCGGCACCAACACGATCATCAGCAGCAAGAATTCTGGTAAATTCAGCCGCTCGTGAATGGAAACTCAAGTACCCAACTTCGAAGATGGATGACTGTGCTGTAGTGTGCTTATTTTTGGATGGTAAAATGGATTCAGAATCAGATTATGAGGAACAAGGCTTCTCTTCTGCTACCATTCAGAGCAACCATTCGGGAAATCCAATCGAATCAGATGAAGGACAAAAGTCCGAGCCATCTTTGCAAAGGAACTTTACTGTGAGATCATCAGAAGAAAACGAGATTAATGGAGCAGTGTCGGTTGATGTTGAAGATGGAACAGCACCGGCTGATGATCAAAACTGGTTAGGCTTGGAAGGTGTCACCCGTGTAAACTCACTCGTTCAACTTCCTAGATTTTCGGAAGAAAGGTCAAAGTCAAACTCTTGA 1419 0.432 MGCCVSTSSRSTCSSGSNGDMVTPSCLEIGFCGKKRARRTFSDHVISLHHLSSLPSRIFTNGKSRGSCIFTQQGRKGINQDAMVVWEDFMSEDMIFCGVFDGHGPQGHLVARKVRDTLPVKLLSFLHSYESKRNGSAKACLKRNMKSDGGDSEKDISSEDKLNSTWKEAFMKAYKAMDKELSSHPKLDCFCSGSTSVTIVKQGSNLFMGYIGDSRAIMGSKDSNDSMVAIQLTVDLKPDLPREAERIKQCKGRVFALQDEPEVSRVWLPFDDAPGLAMARAFGDFCLKEYGVISIPEFSHRLLTDRDQFIVLASDGVWDVLSNEEVVEIVSSAPTRSSAARILVNSAAREWKLKYPTSKMDDCAVVCLFLDGKMDSESDYEEQGFSSATIQSNHSGNPIESDEGQKSEPSLQRNFTVRSSEENEINGAVSVDVEDGTAPADDQNWLGLEGVTRVNSLVQLPRFSEERSKSNS 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g01204 472 Gene3D - 59 378 IPR036457 -
Trre7g01204 472 CDD PP2Cc 65 370 IPR001932 -
Trre7g01204 472 PANTHER PROTEIN PHOSPHATASE 66 368 IPR015655 GO:0004722|GO:0006470
Trre7g01204 472 ProSiteProfiles PPM-type phosphatase domain profile. 66 370 IPR001932 -
Trre7g01204 472 FunFam probable protein phosphatase 2C 52 57 373 - -
Trre7g01204 472 Pfam Protein phosphatase 2C 136 340 IPR001932 -
Trre7g01204 472 SMART PP2C_4 50 368 IPR001932 -
Trre7g01204 472 MobiDBLite consensus disorder prediction 380 444 - -
Trre7g01204 472 MobiDBLite consensus disorder prediction 381 426 - -
Trre7g01204 472 SUPERFAMILY PP2C-like 58 372 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g01204 Trre-Chr7 8517211 8520145 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g01204 1 470 PP2C-type Phosphatase Gene Family AT1G03590 69.456 0.0 636
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g01204 - - gmx:100813306 852.818
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre7g01204 7 8517211 8520145 Trre7g01204 7 8517211 8520145 ECH
Trre11g04068 11 53683538 53685441 Trre7g01204 7 8517211 8520145 PCT