Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g01197 ATGAAGAGTGAAAAATTAACCAAAGACACAAATGGTGTTGATGAGATTGCTAAGGTGATTAATGAAATTGAAAGTAAACAATGTGAGATGGAAAAAGGAAAGGAAAAGATGTTTGTTGAAGATGTTTCCATGCAACAAAATCCTCTCAAGAAGATTTGTATCCCTCAACAACACCAAAACACAAATCAATCATTCTCTCATCAACCTCCTTCATCTAAAATAATTTTTCCTTTTGCTTTTGAAGGCTCTCAATTTCCAATATCATTCACACACAAATCAAAAACAACAAATTTTTTGCCTCCTTTTTCTCCACCTCTTCACCCAACATCACAGCATATTATATCTTTTGAGGCCCAACAAAACATGGGGTATCAACTATCACCACCATTTTCTGCTCCCAATTCTGTTTTATCTCAGCAACGACAACAGATTCAGAATAAGCAGGTTCTTAGGTCCCAAGCGCGGCCTTTGAATGCTGGAAAACTGTATAGAGGAGTGAGGCAACGCCATTGGGGAAAATGGGTGGCTGAGATTCGTCTCCCTCGAAATAGAACTCGTCTCTGGCTTGGAACATTTGACAATGCTGAAAATGCTGCCATGGCATATGATCGCGAGGCTTTTAGGCTAAGAGGAGAAAATGCTAAGCTCAATTTCCCTGAACTCTTTCTTAACAAAGATAAACCACCGACATCATCATCATCATTATCATCCACAATAGTTCAAACTTCGTCTGCTACTTCGCTACATGAAGGTTCAAATTCAACATCAACAACATCCCCGAACACAAATCAACCAGAATCAGTTCATGACGAACATAGCTTGCAAGCTATCAATGATTCTAAAACCGGGGAAAGCAATTCACAGCCGGTTTTGGGAGAAATGACTGGTTGGTTGGAGGCAATTCCAACAGGTTGGGGTCCAGGTAGTCCAATATGGGACGATTTGGACCCCAACAGTAATCTTCTTTTGCAGTCACAGTTTCCTTTTTTGAATCCAAATCAGCAAGAATTTCAAGTTATAAGTGATGCTACTCAGAGACAACAAGATGATAACACAGGACCAGGCTCTACCTCTTGA 1077 0.3993 MKSEKLTKDTNGVDEIAKVINEIESKQCEMEKGKEKMFVEDVSMQQNPLKKICIPQQHQNTNQSFSHQPPSSKIIFPFAFEGSQFPISFTHKSKTTNFLPPFSPPLHPTSQHIISFEAQQNMGYQLSPPFSAPNSVLSQQRQQIQNKQVLRSQARPLNAGKLYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDNAENAAMAYDREAFRLRGENAKLNFPELFLNKDKPPTSSSSLSSTIVQTSSATSLHEGSNSTSTTSPNTNQPESVHDEHSLQAINDSKTGESNSQPVLGEMTGWLEAIPTGWGPGSPIWDDLDPNSNLLLQSQFPFLNPNQQEFQVISDATQRQQDDNTGPGSTS 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g01197 358 PRINTS Ethylene responsive element binding protein signature 163 174 IPR001471 GO:0003700|GO:0006355
Trre7g01197 358 PRINTS Ethylene responsive element binding protein signature 185 201 IPR001471 GO:0003700|GO:0006355
Trre7g01197 358 SMART rav1_2 162 225 IPR001471 GO:0003700|GO:0006355
Trre7g01197 358 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 29 315 - -
Trre7g01197 358 MobiDBLite consensus disorder prediction 227 271 - -
Trre7g01197 358 CDD AP2 161 221 IPR001471 GO:0003700|GO:0006355
Trre7g01197 358 ProSiteProfiles AP2/ERF domain profile. 162 219 IPR001471 GO:0003700|GO:0006355
Trre7g01197 358 Gene3D AP2/ERF domain 162 220 IPR036955 GO:0003700|GO:0006355
Trre7g01197 358 SUPERFAMILY DNA-binding domain 162 220 IPR016177 GO:0003677
Trre7g01197 358 Coils Coil 16 36 - -
Trre7g01197 358 FunFam Ethylene-responsive transcription factor 2 161 220 - -
Trre7g01197 358 Pfam AP2 domain 163 211 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g01197 Trre-Chr7 8444066 8445142 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g01197 149 315 AP2-EREBP Transcription Factor Family AT2G20880 51.705 2.69e-49 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Trre7g01197 AP2 3.4e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g01197 - - tpra:123923279 573.933