Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g01176 ATGGCTTCTTCATCTTCTTTAAGTGAATCAGATGACGATGATCCAGTCTTTGCACCAAGTAACCGTGTGTGGCATGCCAATGGCTGTGTTTTACCTGGATTTAAGAATGACTGTGTATTTAGCTGGGAACTTCCTATCACTAAAGCTTATGCACGCTCAGTCAATGATCAAGTTTTGTACATTCCGCAGAATTCTTTCAAGCACGTTCTTATGAATAAGAATAGCATCACAGTCAGAACACGGCATATCGGAGATGGAATTAAATGGGATCTCATCACCTATGAAAGGAAAACAGGCAAGAAAGAGATGTATGCAAGCAAAGGTTGGTTTGAATTTGTAAGAGCTAACAACCTTAAGGTGGGAGATAAGTTGCAGTTTCAAATTTGCAATCCACCTGATGTTTTGGTTGTGGAAATTGTTCGACGACGCACCATTTCGTAA 441 0.4014 MASSSSLSESDDDDPVFAPSNRVWHANGCVLPGFKNDCVFSWELPITKAYARSVNDQVLYIPQNSFKHVLMNKNSITVRTRHIGDGIKWDLITYERKTGKKEMYASKGWFEFVRANNLKVGDKLQFQICNPPDVLVVEIVRRRTIS 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g01176 146 Pfam B3 DNA binding domain 55 142 IPR003340 GO:0003677
Trre7g01176 146 CDD B3_DNA 59 141 IPR003340 GO:0003677
Trre7g01176 146 SUPERFAMILY DNA-binding pseudobarrel domain 52 141 IPR015300 -
Trre7g01176 146 Gene3D - 33 144 IPR015300 -
Trre7g01176 146 SMART B3_2 46 143 IPR003340 GO:0003677
Trre7g01176 146 ProSiteProfiles B3 DNA-binding domain profile. 44 143 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g01176 Trre-Chr7 8197749 8199767 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre7g01176 B3 8.6e-11 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g01176 - - tpra:123886203 117.087