Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g01142 ATGAATAGCAGTAACGGAGGAGGGATGATGGGTTTCAGTAAATCAGCAGCAGCATCAGCATCACCTTTCACAGTGTCTCAGTGGCAGGAACTTGAACATCAAGCTTTGATCTTTAAATATATGGTTGCTGGTCTTCCTGTTCCACCTGATCTTGTCCTTCCTATTCAGACCACTTCCTTTCACTCCAACAATTTCTTTCATCATCCTATTCCTACCTTGAGTTATTGTTCCTTCTATGGGAAGAAGGTGGACCCCGAGCCAGGGCGATGTAGGAGGACTGATGGAAAAAAATGGAGGTGCGCGAAGGAAGCATACCCAGACTCCAAGTACTGTGAGCGCCACATGCACCGTGGCCGCAACCGTTCAAGAAAGCCTGTGGAATCACAAACTATGGCACAGTCGTCATCCACTGTGACATCTCTGACTGTCGCTAGTGGCAGCAGCAGAGCTGGAAACTACCAGAACCTTCCCACAACAAATGCCTTTGGTAGTCCTCAAAATACTACTGCTTCTGGAACAGACCGCGCCGATTATCATCTTGATACCATTCCCTATGGGATTCCAAGTAAAGAATACAGGTATCTTCAAGGTCTTAAATCTGAGGGTGGAGAACATAGCTTCTTTGCAGAAGGTTCAGGAGGAGGCAACAACAAGGGTCTCCAAATGGAGTCGCAGCTGGAAAATGCATGGCCTTTGATGTCAACCAGAGTTTCCTCTTATTCTGCATCAAAATCGAGTAATAATTCCATGTTGCAAAGTGGTTATCCCCATCATTCATTTTTATCTAGTGAATATGGATCTGGTGAAGCTGTGAAGGAAGAAGGCCAGCCTCTTCGACCCTTTTTCAACGAATGGCCTAAGAGCAGGGAGTCATGGTCAGGTTTAGAAAATGAGAGATCCAACCAAACAGCCTTCTCCACAACTCGACTCTCAATATCCATACCTATGTCATCTTCTGACTTCTCCACCACAAGCTCTCAGTCGCCACATGGTGAGATATAA 1002 0.4591 MNSSNGGGMMGFSKSAAASASPFTVSQWQELEHQALIFKYMVAGLPVPPDLVLPIQTTSFHSNNFFHHPIPTLSYCSFYGKKVDPEPGRCRRTDGKKWRCAKEAYPDSKYCERHMHRGRNRSRKPVESQTMAQSSSTVTSLTVASGSSRAGNYQNLPTTNAFGSPQNTTASGTDRADYHLDTIPYGIPSKEYRYLQGLKSEGGEHSFFAEGSGGGNNKGLQMESQLENAWPLMSTRVSSYSASKSSNNSMLQSGYPHHSFLSSEYGSGEAVKEEGQPLRPFFNEWPKSRESWSGLENERSNQTAFSTTRLSISIPMSSSDFSTTSSQSPHGEI 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g01142 333 PANTHER GROWTH-REGULATING FACTOR 5 14 320 IPR031137 GO:0005634|GO:0006351|GO:0032502
Trre7g01142 333 MobiDBLite consensus disorder prediction 125 175 - -
Trre7g01142 333 ProSiteProfiles WRC domain profile. 84 128 IPR014977 -
Trre7g01142 333 MobiDBLite consensus disorder prediction 116 175 - -
Trre7g01142 333 SMART QLQ_2 21 57 IPR014978 GO:0005524|GO:0005634|GO:0006355
Trre7g01142 333 Pfam WRC 85 127 IPR014977 -
Trre7g01142 333 ProSiteProfiles QLQ domain profile. 22 57 IPR014978 GO:0005524|GO:0005634|GO:0006355
Trre7g01142 333 Pfam QLQ 22 56 IPR014978 GO:0005524|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g01142 Trre-Chr7 7723651 7727276 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g01142 9 127 GRF Transcription Factor Family AT3G13960 58.065 4.52e-44 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Trre7g01142 WRC 2.7e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g01142 - - gmx:100787567 460.299
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre7g01142 7 7723651 7727276 Trre7g01142 7 7723651 7727276 ECH