Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g01109 ATGGCAAAGAAGAAGAAGAGTTGGTTTAATCTAGTGAAGAGACTTTTCATATGGGATACACATTCAACACAAGAGAAGAAGGAGAAAAGAAGGAAATGGATATTTGGAAAGTTAAAGACAAAGAAGTTACCTTCAATTACAGCTCCACCAACAACATTAAAAGAAACAGAACAAAATGAAGCAGAGGTGGAAAAAACCAAGCATTCTGAATCTGCAGTTACTGTTATTCTTAGTGGTGTTTCACAAGATAACTCACAAGAATCTGAACCTGTGAAAACTGTGAATGGTGTTTCTCAATCAATATATAAGTGCCAGAAAGTGATTCAAGAATTTGCAGCTATCAAAATTCAAACTGCTTTTAGGGGTTACCTAGCAAAGAAGGCTTTGAGGGCATTGAAGGGAATAGTTAAACTTCAAGCTATCATTCGCGGAAGAGCGGTGAGACGCCAAGCTATGAGTACTCTTAAGAGCTTACAATCCATTGTAAGTATCCAATCAAAGATATGTGCAAGGAGACTGCAAATGGTTGAAGGAAGATGGGAGGATTGTGTTGAATATGAAGACATGCATTATTCTAAAGACAAGATAATTAGGATGGACTCTAACAGTGAAAGAAAGTGGGATGACAGCACTTTATTGAAGGAAGAGGTAGATGCTTCTTGCATGATCAAGAAAGAAGCTATTATTAAGAGAGAAAGAATAAAAGAATACACATTTAATCATAGAAGGTCAGCAGAGTCAGAAAGAAGTAAAGTGAATGGAAGATGGAGATACTGGCTGGAGCAATGGGTAGATACACAACTTTCAAAAAGCAAAGAACTTGAAGATTTAGACTCAGTTTTCAGCTCAAATTCTAGAACTGGTGAAGAATTCGGAACAAGACAACTTAAGCTGAGAAATACTACTACTACTACTCAGAGACAAAATCAAAATCCACTTGAAGGATTAGATTCACCATTACTTCTATCAAGAAAATCTTTCCCTCACAAGAGACAATGTTCAATAGAAGATCAATCATTTTCAAGCTCCCCTGCAACTCCAGCATATATGGCTGCTACTGAATCAGCAAAAGCAAAAGCAAGATCAACAAGTTCACCAAAAGCAAGATCATGGAACTATGACATGAACTCAGATAGCTATTTATCACCTTGCAAGAAAAAGTTATCAATTGTTTCATCTGTTAACAGTGATGTGCTTAATGGTAGAATGGGAAAGATTAGTGGCAGTAACCAACAAAGATCACCAAGTCTTAAGGGTATTTCAGTGCCTATAAAATCAAGCAGGACCATAATAAAGGATCTTAGCATTAATTCAGATGGTTCATTGCCTAATTGGGATAGACAAAGTTCATTCAGATGA 1359 0.365 MAKKKKSWFNLVKRLFIWDTHSTQEKKEKRRKWIFGKLKTKKLPSITAPPTTLKETEQNEAEVEKTKHSESAVTVILSGVSQDNSQESEPVKTVNGVSQSIYKCQKVIQEFAAIKIQTAFRGYLAKKALRALKGIVKLQAIIRGRAVRRQAMSTLKSLQSIVSIQSKICARRLQMVEGRWEDCVEYEDMHYSKDKIIRMDSNSERKWDDSTLLKEEVDASCMIKKEAIIKRERIKEYTFNHRRSAESERSKVNGRWRYWLEQWVDTQLSKSKELEDLDSVFSSNSRTGEEFGTRQLKLRNTTTTTQRQNQNPLEGLDSPLLLSRKSFPHKRQCSIEDQSFSSSPATPAYMAATESAKAKARSTSSPKARSWNYDMNSDSYLSPCKKKLSIVSSVNSDVLNGRMGKISGSNQQRSPSLKGISVPIKSSRTIIKDLSINSDGSLPNWDRQSSFR 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g01109 452 MobiDBLite consensus disorder prediction 284 316 - -
Trre7g01109 452 Gene3D - 109 159 - -
Trre7g01109 452 Pfam IQ calmodulin-binding motif 112 130 IPR000048 GO:0005515
Trre7g01109 452 PANTHER IQ-DOMAIN 5-RELATED 1 392 - -
Trre7g01109 452 MobiDBLite consensus disorder prediction 284 320 - -
Trre7g01109 452 Pfam Protein of unknown function (DUF4005) 335 407 IPR025064 -
Trre7g01109 452 ProSiteProfiles IQ motif profile. 133 160 IPR000048 GO:0005515
Trre7g01109 452 ProSiteProfiles IQ motif profile. 109 137 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g01109 Trre-Chr7 7437437 7440707 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g01109 4 452 IQD Protein Family AT5G13460 47.234 7.75e-114 340
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g01109 - - gmx:100800192 637.876