LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre7g01105	ATGGAGAAATACTTGAGGAAAAACTTTTACGTGCAACCCAAGCGACCACCGGAAGATGCTCTACGTCGATGGAGATCTGCCGTCTCTGTCGTCAAGAATCCCCGTCGCCGCTTCCGATGGGTTGCCAATCTTGCGCAACGCGCCGATGCAGAACAAAAACGCAAGAAGCTTCAGGAAAAGATACGAGTGGCTCTTTATGTACAACAAGCAGCATTGCATTTTATAACTGCTGGAAGCCGACCAACCGGTAAATACATGCTCTCCAAAGAGACTCAAGATGCAGGTTTCGGAATCGAACCGGATGAATTAGCATCCATCATTAGATCCCATGACACTAAATCTTTAGAACAACATGAAGGAGTTGAAGGATTAGCAAAAGCTGTCCGTGTATCGTTTAAAGAAGGCGTTAATTCAAACGACATAAAACATAGACAAGCTATTTACGGTCATAACCGTCATACCGAGAAACCCTCGAGGAGTTTTTGGATGTTTGTTTGGGATGCAATGCAAGACTTAACACTAAACATCCTTATTCTATGTTCTGTTGTTTCAATTGTTGTCGGAATCTTAACCGAAGGTTTTCCTAAAGGTATGTATGATGGAGTTGGGATCATACTATGTATTATTTTAGTGGTTCTTGTCACTTCAATAAGTGATTATAAACAGTCTTTGCAATTTAAGGATTTGGATAAAGAGAAGAAAAATGTTAGCATTCATGTTACAAGAGATAGTAGAAGACAAACGGTTTCGATTCATGATCTAGTCGTTGGAGATATAGTTCATCTCGCAATCGGAGACATAGTTCCTGCTGATGGAATATACATATCAGGTTTTAGTTTATTGATTGATGAATCGAGTTTATCCGGTGAGAGTGAAGCCGTGAATGTTGATCAACAAAAGCCTTTTCTTCTATCCGGAACAACGGTCCAAGACGGTTCTGCTAAGATGCTAGTGACATCGGTCGGCATGAGGACAGAATGGGGAAGATTGATGGAAACTTTGAATGAAGGTGGTGATGATGAGACACCACTTCAAGTGAAACTAAATGGTGTTGCTACACTTATTGGAAAAATAGGGTTAGGTTTCGCATTGTTAACATTTTTGGTTCTTACCGGTAGGTTTTTGTTGGCGAAAATATCTCACCATACTATCACTAAATGGTCTCTAAATGATGCATCTAAGCTTCTCAATTTCTTTGCAACTGCTGTTATTATAATAGTTGTCGCTGTTCCTGAGGGTTTGCCTTTAGCCGTTACATTAAGCCTCGCATTCGCAATGAAGAAGTTAATGAACGATAAGGCGCTAGTTAGGCACTTATCTGCATGTGAAACAATGGGATCTGCCGGTTGTATTTGCACTGATAAAACCGGAACTTTGACGACAAATCAAATGGTTGTTGACAAGATATGGATTTGTGAACAAACTAAGACAATTAAAAGCAGCAACTGTGATGATAATGTGTTAAAGAACTCGATTTCGGAGGAGATATTTCATCTCTTTTTGCAGTCAATATTTCAGAATACTTCCTCAGAAGTTGTTAAAGGTGAAGATGGAAAGACCAAAGTAGTTGGTACTCCAACAGAATCAGCATTGCTTGGATTTGGTTTGATTTTAGGAGGTGATTCTAAGTTTTACAATGATAAGTATAAGATAGTTAAGGTCGAACTGTTCAATTCAACTCGAAAAAAGATGTCGGTTCTTGTTTCTCTTCCTGATAGAAATAACAAAACTCGAGCATTTTGTAAAGGAGCATCCGAAATAGTGGTTAAAATGTGTGACAAAGTTGTTAATTCACAAGGTAAAGTTGTTTATTTGAATGAAAATAAAAGAAATAGTATCAATGAAGTTATTAATAGTTTTGCTTCCGAGGCACTGAGAACACTCTGCATGGCTTTTACGGATATTGAAGGAGACTCTGATAATAATAACACTATTCCCGAGGATAAATATACTTTAATTGCTATTATCGGGATCAAGGATCCAGTGAGACCTGGTGTTAGAGAAGCTGTTAAGACTTGTTTGGATGCTGGAATCACTGTTAGAATGGTAACCGGTGATAATATAAACACTGCTAAAGCTATAGCTAGAGAATGCGGTATTTTGACAGATGGATTGGCCATAGAAGGACCAGATTTTCGAAACAAGACACCGCAAGAATTGGAACGGATCATACCTAAATTGCAGGTAATGGCTAGATCTTTGCCACTTGATAAGCACACATTGGTGACCCATTTGAGGAATGACTTTAATGAAGTTGTGGCAGTAACAGGAGATGGGACCAATGATGCTCCAGCTTTGCATGAAGCTGATATTGGATTTGCTATGGGTATTGCTGGAACAGAGGTTGCAAAAGAGAATGCAGATGTAATTGTAATGGATGATAACTTTGCAACAATTGTGAATGTTACAAAATGGGGACGTTCCGTTTATATTAACATACAAAAGTTTGTCCAGTTCCAGTTAACAGTTAACGTTGTAGCTCTCTTGCTGAATTTTGTTTCAGCATGTGTCTCAGGTTCTGCTCCTCTTACTGCTGTTCAAATGCTATGGGTAAACATGATTATGGACACATTAGGTGCATTAGCATTGGCTACAGAACCACCACATGATGGATTAATGAAGAGACCACCTATTGGAAGAAATGCAAAGTTCATCACTGGAGTTATGTGGAGGAATATCATTGGTCAAAGTCTTTATCAAACTATTGTTCTTTTGGTTCTTAAATTTCGTGGAGAACATATTCTTAAGCTCAATGGACCTGATGCTACATCTATCCTTAATAGTGTCATTTTCAACACCTTTGTCTTTTGCCAGGTATTCAACGAAGTAAACAGTCGCGACATGGAAAAGATAAATGTATTCAAAGGCTTATTCAGTAGCTGGATTTTTGTGATGGTAATAGCCTCAACAGTTTGCTTTCAAGTCATAATAGTTGAATTTCTTGGTACTTTTGCTCAAACAGTGCCACTGAATCGCGAATTATGGTTAACAAGTGTGATGATTGGTGCTGTAAGTTTAGTAGTAGCTGTTGTCCTGAAATGCATTCCTGTTCCTGTCAAGAACTACGTCGCAACACATCATGACGGTTATGAGCAGCTCCCATCTGGACCAGAGTTAGCATGA	3123	0.3884	MEKYLRKNFYVQPKRPPEDALRRWRSAVSVVKNPRRRFRWVANLAQRADAEQKRKKLQEKIRVALYVQQAALHFITAGSRPTGKYMLSKETQDAGFGIEPDELASIIRSHDTKSLEQHEGVEGLAKAVRVSFKEGVNSNDIKHRQAIYGHNRHTEKPSRSFWMFVWDAMQDLTLNILILCSVVSIVVGILTEGFPKGMYDGVGIILCIILVVLVTSISDYKQSLQFKDLDKEKKNVSIHVTRDSRRQTVSIHDLVVGDIVHLAIGDIVPADGIYISGFSLLIDESSLSGESEAVNVDQQKPFLLSGTTVQDGSAKMLVTSVGMRTEWGRLMETLNEGGDDETPLQVKLNGVATLIGKIGLGFALLTFLVLTGRFLLAKISHHTITKWSLNDASKLLNFFATAVIIIVVAVPEGLPLAVTLSLAFAMKKLMNDKALVRHLSACETMGSAGCICTDKTGTLTTNQMVVDKIWICEQTKTIKSSNCDDNVLKNSISEEIFHLFLQSIFQNTSSEVVKGEDGKTKVVGTPTESALLGFGLILGGDSKFYNDKYKIVKVELFNSTRKKMSVLVSLPDRNNKTRAFCKGASEIVVKMCDKVVNSQGKVVYLNENKRNSINEVINSFASEALRTLCMAFTDIEGDSDNNNTIPEDKYTLIAIIGIKDPVRPGVREAVKTCLDAGITVRMVTGDNINTAKAIARECGILTDGLAIEGPDFRNKTPQELERIIPKLQVMARSLPLDKHTLVTHLRNDFNEVVAVTGDGTNDAPALHEADIGFAMGIAGTEVAKENADVIVMDDNFATIVNVTKWGRSVYINIQKFVQFQLTVNVVALLLNFVSACVSGSAPLTAVQMLWVNMIMDTLGALALATEPPHDGLMKRPPIGRNAKFITGVMWRNIIGQSLYQTIVLLVLKFRGEHILKLNGPDATSILNSVIFNTFVFCQVFNEVNSRDMEKINVFKGLFSSWIFVMVIASTVCFQVIIVEFLGTFAQTVPLNRELWLTSVMIGAVSLVVAVVLKCIPVPVKNYVATHHDGYEQLPSGPELA	1040

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre7g01105	1040	SMART	Cation_ATPase_N_a_2	115	189	IPR004014	-
	Trre7g01105	1040	ProSitePatterns	E1-E2 ATPases phosphorylation site.	454	460	IPR018303	-
	Trre7g01105	1040	SUPERFAMILY	Metal cation-transporting ATPase, ATP-binding domain N	458	666	IPR023299	GO:0000166
	Trre7g01105	1040	Pfam	Ca2+-ATPase N terminal autoinhibitory domain	6	48	IPR024750	GO:0005516
	Trre7g01105	1040	SUPERFAMILY	HAD-like	451	861	IPR036412	-
	Trre7g01105	1040	CDD	P-type_ATPase_Ca_PMCA-like	143	889	-	-
	Trre7g01105	1040	Pfam	Cation transporter/ATPase, N-terminus	117	184	IPR004014	-
	Trre7g01105	1040	PRINTS	H+-transporting ATPase (proton pump) signature	613	631	IPR001757	GO:0005215\|GO:0005524\|GO:0016020\|GO:0016887
	Trre7g01105	1040	PRINTS	H+-transporting ATPase (proton pump) signature	756	772	IPR001757	GO:0005215\|GO:0005524\|GO:0016020\|GO:0016887
	Trre7g01105	1040	PRINTS	H+-transporting ATPase (proton pump) signature	788	813	IPR001757	GO:0005215\|GO:0005524\|GO:0016020\|GO:0016887

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre7g01105	Trre-Chr7	7381676	7388706	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre7g01105	57	1037	Primary Pumps ATPases	AT3G57330	69.145	0.0	1387

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre7g01105	K01537		-	gmx:100801260	1708.35

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