Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g01102 ATGACCGGGAGGAAGGTTAAACTTGCCTTTATCTCCGATGATTTAGCAAGGAAGGCATGCTACAAGAAAAGAACGAAGAGTATCATCAAGAAGGTGAGAGAACTCGCCATTCTTTGTGATGTTCCTGCCTGTGCTATAATTTCAAACCCTTTTGATTCTAAAACAGTGGTGTGGCCGGATCGAGAGGGAGCCAACCAGGTGATTGAAAGATATCGTAATTCTACGAAGATAGATGAGACAAAAAATATGAACCAAGAGAGCTTCCTTTTGCAGAGAATTACTAAGGCCAGAGAGCAACTTGAAAAGCAAAGGCGCAACAATCATGAGAAGGAGATGACCATTCGTATGGTTGAGTGCATGCGAAACAAAAAGTTGCCTGATGATATATCTATTTCAGATCTGAAAGAATTTGATAAGATAAGTGAGAAAACTCTGAAAGAGATTGAGAACAAGATTGTTGATCTCCATTTATCCAATTAA 480 0.3937 MTGRKVKLAFISDDLARKACYKKRTKSIIKKVRELAILCDVPACAIISNPFDSKTVVWPDREGANQVIERYRNSTKIDETKNMNQESFLLQRITKAREQLEKQRRNNHEKEMTIRMVECMRNKKLPDDISISDLKEFDKISEKTLKEIENKIVDLHLSN 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g01102 159 Coils Coil 86 113 - -
Trre7g01102 159 SUPERFAMILY SRF-like 4 88 IPR036879 GO:0003677|GO:0046983
Trre7g01102 159 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 50 IPR002100 GO:0003677|GO:0046983
Trre7g01102 159 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Trre7g01102 159 ProSiteProfiles MADS-box domain profile. 1 47 IPR002100 GO:0003677|GO:0046983
Trre7g01102 159 PANTHER MADS BOX PROTEIN 5 152 - -
Trre7g01102 159 CDD MADS_SRF_like 2 84 IPR033897 GO:0000981|GO:0000987|GO:0045944
Trre7g01102 159 Gene3D - 13 93 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g01102 Trre-Chr7 7357456 7357935 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g01102 1 152 MADS-box Gene Family AT5G26630 43.791 3.68e-36 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Trre7g01102 SRF-TF 7.9e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g01102 - - gmx:100792290 186.037