Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g01047 ATGAAGAGATTGCGTTCAACCGAAGATCTTCACTCTTACAACGGTGAAAAGAACGTTGCTGCTGCTGCTGATAAGAATTCAAATCTTTCTGTTAAGGAATCCAATTCAAATCTCAACCGTTCGTTTTCTTCTACTGGTCAAAGAAGTTTTCATTATAAACAAGAGAATGTGAGGAAGAATTTGATATCATCGTCGTCGTCTTCTTCTCGATTTGATAGAGATAGAGATAGGGATCGGACGGTGGAGGAAGATCGAGAAGGTTCTAGAATTGTTCGGAAGCGATCTGAACATGATTTTGATCGGAGGAAGGGTTTTGATCGGTATAGTAGGGATGGTGGTTACAGTGGAGGTGGAAGTGGAGATAGAGATAGAGATAGGAATTCGATTCATCGGTCGGAGAGTTTTTGTGGAGGTTCGAGGAGGGAGTTTCCGAAGGGTTTTCGATCGGAGAGGGATCGTTCGAGGAGGGAAGGGAGTGTATCGTCGTGGAGGAGAGGATTGAAGGATTTTGATGAGAGTAGTAGAGGGGGAAATAGTAGGGTTGAAGAGAGAATTGCGAGGTCACCGAAGGGATTTTCGAGGGATGTGAAATCGCCTAGTTGGTCTAAGGATTCGGAGAGTGAACAATCCAAGAAGAGATCTTCGGAGTCTCCGAGAGTGTTTAGAGAGGCTACTAAGTCGATATCTAAGTCGCCTTCTTGGTCGAAGGATTCGGAGAGTGAGCAATCGAAGAGTGTTAGTGTTGAGGTGAAGAAAAGTGATGAGTTGTTGCAGCAGGTTCAGAGTGGGAGTGGTAGTGATGAAATGGAAGAAGGGGAGCTTGTACCTGAACCTGTCACTAAAGCTGAGGCCGAAGCGGCTTGTAAAGATGCTGCAGCTGGAAAGGAGAGCTTGCAAGTCTCCGAGGATGAACAAGTGCATAAGAAGAATGAATTTGGTTCGAGCGGTGTAGATGTTGTTATGGAAGAAAAACAGATGTTGGGTGAGAAAGAGGCGAAAACTATGGAGAATGTTGATTCTGAGGTAAAAGATGCGGAGAAGGAAGTTCATCAATTGCCTAAGAATCAAGGTAAATCTACTAAGGAAATTCCCAAGAATCAAGATAAATCTACTAAGGAAATTCCTGTTACCAAGGCTGAGATTAGAACTGTTGATAATGATGATGTTAAGAAGGATGTGTGTTTAAATGGTGATGATACTCGGCACAAGGAGGAGGAGACAGAGAAGGGGGAAACTACAGAGAAGGCATTGCTTAATGAAGAGGAGCATGGGGTGGACAGGGGTTTAGGTGGTGATAAACTTGACAAAAACGATGAAGGCTCAAAGGAGAATGCAGTTGGTGATGAAATGAAGGACGAAACGATGATGGAGAGTGTGACAAATAATGTGAAGGATAAAGGCAAAAGCATCTCGGTCGCACCTGATGTTGCTCATTCTTCAGAAGATGGCTTGTGGACTGATAGAGGATCGAAAGATCTCACAACATGCTCTGCAGATGTCATGGAAGGTCCAAGCACAAGAGGGTTTGAGCTTTTCTCTAGATCTCCGGTGAGAAAAGTAGAAAAATCTGATCGCTCGGTTCTCAAAAAGGAGAATGATGACAGTCTTGCAATGGGGCAGCTTGATCTTACTCTGAGCTTGCCGAATGTTCTGTTACCGATTGGAGCTCAGGAGACAGCATCGCAAGCCCCTGGTTCTCCTAGTCAAGCGCTTAGTGTTCAGTCTCTAAGTAATACATTTTGCACTAACTCAGATGGTTTTACTGCATCAATGTCATTTTCAGGTTCACAATCATTATATCACAATCCAAGTTGTTCGCTAACGAAAAATTCAGTTGACTATGAACAATCTGTTGGCAAATCGGTTGGTAGTCGCCCCTTGTTCCAGGGATTTGATTGGCAAGCCCTATCTCAGGCTGATCCCAAGCCGAAGGAAGTTCCCTCTGGTCAGAGAACATCAATGAATGGGAACGGCTCTCTTTACCAGCCTCAAGCATCGTGGGGAGTTTTAGATACTCAAGCTTTGAAAGGTCAACATTCTAGGCCTCTAGAAGGAAGCTCCAAAATGGGAAGTGGGCTTGAAAGGCAATTGAGTTTTCATAAGCAGCTTTCAGGAAATTCAAGACAACATGATGACGTTCGATCTCCCACACAGAGTGTTGGGTCACATGACAATGGATCGAATTATAGTTTTGAGAAAAAGAGGGAGGTTAGGGAAAGAAGTAGCAGTAGTCTACATCGATCAACTAGCCAGAAGGGACAAGATCATTTTCTGATGGGTGGACTTGATTTTGTTAAGACAATCATTGCAAGAATAGTTTCTGAACCTGTGCTAGCAATGTCCAGAAAGTTCCATGAAATGAATGGACAGTACATAACGCGTATGAAAGAGGGTATTCGGGAACTCATGGTCAATGCAGATAACCAGGGACAAATACTTGCTTTTCAAAATGTTTTGCAGAACAGGTCTGACATAACCTATGATGTCCTAGTGAAGTGTCACCTAGCGCAACTGGAAATTTTGGTTGCATTAAAAACTGGTGTAGTCCATTATCTTCACCTAGATGATAACATTTCATCTTCTGATTTAGCTCAAGTTTTTCTAAACTTGAAGTGTAGGAATTTGTCATGTCGAAGTCAGTTGCCTGTTGATGAATGTGATTGCAAGCTCTGTGCGCAGAAGAGCGGTTTTTGCAGGGAATGTATGTGTCTTGTGTGTTCTAAGTTTGACAATGCATCGAGCACATGTAGTTGGGTTGGGTGTGATGTTTGTCTTCACTGGTGTCATACTGACTGTGGATTACGAGAATCTTATATTAGAAATGGACATAGTACTACTGGAACGAAAGGGACGACTGAGATGCAGTTTCACTGCATTGCTTGTGATCACCCTTCTGAGATGTTTGGCTTTGTCAAAGAGGTGTTTCAAAATTTTGCAAAAGACTGGTCACCCGAATCTCTTCGCAAGGAACTTGAATATGTGAAGAGAATCTTTTCTGCCAGCAAGGATATCAGGGGGAGACAGTTGCATGAGATTGCAGATAAAATGTTGCCGAGCCTGGCTATTAAGTCCAACATTCCTGAGGTTGTAAGACACATCATGTCTTTCTTTTCTGATTGTGATACTTCCAAATTACCCATGACATCAAACTTTGCTGGGAAGGAACAAGTCAAAGAAAGCAACGGGGTAGCTGGGCCCAGCCAGGAAGCTGCTTGGCTAAAATCTATTTATTCAGAAAAGCCGGCTCTGTTAGAAAGACCTGCAAGCATCCTTCCAAGATTTGACCAGAATGATAAAAGGACACTGGTGCAAGAGTTGCAGATGAGTAGTAGTATCCAAAAGGACTTCTGTTTTGATGAATTAGAAAGTATAATAAAAATCAAACATGCAGAGGCCAAAATGTTCCAATCTCGTGCTGATGATGCTAGGAGAGAAGCTGAAGGGTTAAAACGCATTGCCCTTGCAAAGAATGAGAAAATTGAAGAAGAGTATGCCAATCGAATTGCCAAGCTGCGTTTTGCCGAGACAGATGAATTGCGTAAACAAAAGTTCGAAGAACTCCAAGCAATAGAGAGGGCACATATGGAGTATTTGAACATGAAAACGAGAATGGAGTCGGACATTAAAGATCTGTTATCCAAAATGGAAGCTACTAAAATGAACCTTGCCATGTGA 3675 0.4278 MKRLRSTEDLHSYNGEKNVAAAADKNSNLSVKESNSNLNRSFSSTGQRSFHYKQENVRKNLISSSSSSSRFDRDRDRDRTVEEDREGSRIVRKRSEHDFDRRKGFDRYSRDGGYSGGGSGDRDRDRNSIHRSESFCGGSRREFPKGFRSERDRSRREGSVSSWRRGLKDFDESSRGGNSRVEERIARSPKGFSRDVKSPSWSKDSESEQSKKRSSESPRVFREATKSISKSPSWSKDSESEQSKSVSVEVKKSDELLQQVQSGSGSDEMEEGELVPEPVTKAEAEAACKDAAAGKESLQVSEDEQVHKKNEFGSSGVDVVMEEKQMLGEKEAKTMENVDSEVKDAEKEVHQLPKNQGKSTKEIPKNQDKSTKEIPVTKAEIRTVDNDDVKKDVCLNGDDTRHKEEETEKGETTEKALLNEEEHGVDRGLGGDKLDKNDEGSKENAVGDEMKDETMMESVTNNVKDKGKSISVAPDVAHSSEDGLWTDRGSKDLTTCSADVMEGPSTRGFELFSRSPVRKVEKSDRSVLKKENDDSLAMGQLDLTLSLPNVLLPIGAQETASQAPGSPSQALSVQSLSNTFCTNSDGFTASMSFSGSQSLYHNPSCSLTKNSVDYEQSVGKSVGSRPLFQGFDWQALSQADPKPKEVPSGQRTSMNGNGSLYQPQASWGVLDTQALKGQHSRPLEGSSKMGSGLERQLSFHKQLSGNSRQHDDVRSPTQSVGSHDNGSNYSFEKKREVRERSSSSLHRSTSQKGQDHFLMGGLDFVKTIIARIVSEPVLAMSRKFHEMNGQYITRMKEGIRELMVNADNQGQILAFQNVLQNRSDITYDVLVKCHLAQLEILVALKTGVVHYLHLDDNISSSDLAQVFLNLKCRNLSCRSQLPVDECDCKLCAQKSGFCRECMCLVCSKFDNASSTCSWVGCDVCLHWCHTDCGLRESYIRNGHSTTGTKGTTEMQFHCIACDHPSEMFGFVKEVFQNFAKDWSPESLRKELEYVKRIFSASKDIRGRQLHEIADKMLPSLAIKSNIPEVVRHIMSFFSDCDTSKLPMTSNFAGKEQVKESNGVAGPSQEAAWLKSIYSEKPALLERPASILPRFDQNDKRTLVQELQMSSSIQKDFCFDELESIIKIKHAEAKMFQSRADDARREAEGLKRIALAKNEKIEEEYANRIAKLRFAETDELRKQKFEELQAIERAHMEYLNMKTRMESDIKDLLSKMEATKMNLAM 1224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g01047 1224 CDD PHD_OBE1_like 902 961 IPR047578 -
Trre7g01047 1224 MobiDBLite consensus disorder prediction 1 490 - -
Trre7g01047 1224 MobiDBLite consensus disorder prediction 701 752 - -
Trre7g01047 1224 MobiDBLite consensus disorder prediction 296 311 - -
Trre7g01047 1224 MobiDBLite consensus disorder prediction 701 727 - -
Trre7g01047 1224 MobiDBLite consensus disorder prediction 638 663 - -
Trre7g01047 1224 MobiDBLite consensus disorder prediction 69 109 - -
Trre7g01047 1224 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 982 1001 IPR004082 -
Trre7g01047 1224 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 1158 1180 IPR004082 -
Trre7g01047 1224 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 1119 1139 IPR004082 -
Trre7g01047 1224 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 783 805 IPR004082 -
Trre7g01047 1224 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 909 929 IPR004082 -
Trre7g01047 1224 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 822 837 IPR004082 -
Trre7g01047 1224 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 837 852 IPR004082 -
Trre7g01047 1224 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 863 884 IPR004082 -
Trre7g01047 1224 PANTHER VERNALIZATION-INSENSITIVE PROTEIN 3 1 1222 IPR004082 -
Trre7g01047 1224 MobiDBLite consensus disorder prediction 323 459 - -
Trre7g01047 1224 Pfam Coiled-coil region of Oberon 1096 1212 IPR032535 -
Trre7g01047 1224 Pfam PHD - plant homeodomain finger protein 872 995 IPR032881 -
Trre7g01047 1224 Coils Coil 1132 1163 - -
Trre7g01047 1224 MobiDBLite consensus disorder prediction 21 68 - -
Trre7g01047 1224 MobiDBLite consensus disorder prediction 728 745 - -
Trre7g01047 1224 MobiDBLite consensus disorder prediction 648 663 - -
Trre7g01047 1224 MobiDBLite consensus disorder prediction 117 220 - -
Trre7g01047 1224 MobiDBLite consensus disorder prediction 252 266 - -
Trre7g01047 1224 Coils Coil 328 355 - -
Trre7g01047 1224 MobiDBLite consensus disorder prediction 221 241 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g01047 Trre-Chr7 6982836 6987592 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g01047 872 969 PHD Gene Family AT5G57380 32.653 1.88e-10 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g01047 - - gmx:100807816 1482.23