Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g01033 ATGGAAGCGATTGTGGTTGACGTCGGTTCTAAACTTCTCAAAGCTGGTTTTGCAATTCCTGATCAGACTCCTGCCATGATAATTCCGACTCAGATGAAACGGATGCTTGATGATGGTTCAATCACCGATGGTTCACCGGTTGATGATGTCACCATTGATCCAGTCGTGCGAGGATACATTAGAGATTGGAATGCTGTGGAAGATTTGTTGCACCATGTTTTATATACTGGTCTTGGGTGGGAAATCGGCAATGAAGGACACATACTATTTACAGACCCACTTTGTACTCCAAAGGCCAACAAGGAACAGTTGGTGCAACTAATGTTTGAAAAATTCAACATATCGGGGTTTTATGCATCAGAACAATCAGTATTATCGCTGTATGCTGTGGGACGTATCTCAGGGTGCACTGTTGATATTGGACATGGAAAAATAGATATTGCGCCTGTGATTGAGGGTGCTGTTCACCACATCGGTTCAAGAAGATTTGAGTTTGGAGGTACTGATCTAACTAATTTCCTGGCTCAAGAACTCGGCAAATCAAATCCACAAGTAAATATCAGCATGTCTGATGTGGAGAAAATAAAAGAGCAATATTCATGCTGTGTTGAAGATGAGTTAGCTTATCAGAAAACCCAGTATTCTTGTCCTGTGGAGAAACATACGCTTCCTGATGGACAGGTGATAACAATTGGGAGAGAAAGATACACGATTGGTGAAGCTTTATTCCAGCCATGTCTGTTGGGTTTAGAAGCTCATGGCATTGTTGAGCAGCTTGTCCGTGCTATTTCAAATTTATCATCTGATAATCACCGACAGTTGCTGGAAAATACCGTGGTTTGTGGTGGCACTTCTTCTATGATTGGTTTTGAAGAGAGGTTTCAGAAGGAATCTACCTTAAGTTCTTCAGCAGTTCAACCTACCCTGGTTAAGCCTCCAGAATACATGCCAGAAAATTTAAACATGTATTCTGCATGGGTGGGAGGTGCCATACTCGCTAAAGTAGTTTTTCCACAAAATCAGCATATAACAAAGGCAGATTATGATGAAACCGGGCCTTCCATTGTTCACCGGAAATGCTTTTGA 1086 0.418 MEAIVVDVGSKLLKAGFAIPDQTPAMIIPTQMKRMLDDGSITDGSPVDDVTIDPVVRGYIRDWNAVEDLLHHVLYTGLGWEIGNEGHILFTDPLCTPKANKEQLVQLMFEKFNISGFYASEQSVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVHHIGSRRFEFGGTDLTNFLAQELGKSNPQVNISMSDVEKIKEQYSCCVEDELAYQKTQYSCPVEKHTLPDGQVITIGRERYTIGEALFQPCLLGLEAHGIVEQLVRAISNLSSDNHRQLLENTVVCGGTSSMIGFEERFQKESTLSSSAVQPTLVKPPEYMPENLNMYSAWVGGAILAKVVFPQNQHITKADYDETGPSIVHRKCF 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g01033 361 SUPERFAMILY Actin-like ATPase domain 131 361 IPR043129 -
Trre7g01033 361 SMART actin_3 1 361 IPR004000 -
Trre7g01033 361 Gene3D - 123 324 - -
Trre7g01033 361 PANTHER ACTIN 3 354 IPR004000 -
Trre7g01033 361 SUPERFAMILY Actin-like ATPase domain 2 138 IPR043129 -
Trre7g01033 361 Gene3D - 4 355 - -
Trre7g01033 361 Gene3D Actin; Chain A, domain 4 165 252 - -
Trre7g01033 361 FunFam Actin-related protein 7 165 252 - -
Trre7g01033 361 FunFam Actin-related protein 7 4 127 - -
Trre7g01033 361 Pfam Actin 2 361 IPR004000 -
Trre7g01033 361 CDD NBD_sugar-kinase_HSP70_actin 4 166 - -
Trre7g01033 361 PRINTS Actin signature 100 113 IPR004000 -
Trre7g01033 361 PRINTS Actin signature 217 233 IPR004000 -
Trre7g01033 361 PRINTS Actin signature 125 144 IPR004000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g01033 Trre-Chr7 6898116 6901560 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g01033 1 361 Cytoskeleton Gene Families AT3G18780 36.842 1.26e-69 221
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g01033 K16615 - gmx:100813266 681.789