Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g01028 ATGTCCAACCATAATCATAATCACAAATTTTCAATTTCATCTAGCTTGTTGGTATTTTTGTTACTAAATCTATGTCAAATCACTACAAGCTTAACACAATTTGAAGCGTTGCTAAAATGGAAACAAAGTCTCCCTCCACAACCAATTCTTGATTCATGGAAAATTAACAACTCAAGTTCAACACAAACACCATGTTCATGGAGAGGTATAACTTGTGATTCAAAAGGAAGTGTTACAATCATAAACTTGGCTTATACTGGACTTGAAGGTACTCTTAATCACTTAAACTTATCGGTTTTTCCAAACCTTCTTCGTCTCGATCTTAAAACAAATAATCTCACTGGTGTTATACCTGAAAACATCGGCGTTCTTTCGAAACTCCAATTTCTTGATCTTTCTACTAATTATCTCAATGGAACTTTGCCTCTTTCTATAGCCAATTTGACTCAAGTTTACGAGCTTGATGTTTCGAGAAACGATGTTTCAGGTATATTAGACCCTCGTTTGTTTCCTGATGGAACTAATAAGCCCAGTTCCAGAACTGGGCTTATAGGCATCAGGAATCTTCTTTTCCAAGATACCCTTTTAGGCGGTCCACTTCCGATCGAAATTGGGAATATAAAAAACTTGACTATACTAGCTCTTGATGGAAATAATTTCTCTGGGCCAATTCCTTCATCTTTAGGGAAATGTAAACATTTAAGCATTCTTAGATTAAATGAAAATCAATTCTCTGGTCAAATTCCACGAAGTCTAGGCAAATTAACCAACTTAACTGATCTTAGATTTTTCACCAACAACTTAAATGGAACTGTGCCACAAGAATTTGGAAACCTTTCATCTTTGATTGTGTTACATCTTGCTGAGAACAATTTCATTGGTGAGTTACCACCAGAAATTTGCAAAAGTGGAAAACTTGTTAATTTCAGTGCTGCTTATAACAGTTTCACTGGTCCAATTCCAAGAAGTCTTAGAAACTGCCCTTCTTTGTATAGAGTTAGAATGGAATACAACGAGTTAACCGGTTATGCAGATCAAGATTTCGGAGTTTATCCGAATCTTACTTACATTGATTTCAGCAATAATAGAGTTGAAGGTGGTTTATCTTCTAAATGGGGTTCATGCAAAAACTTGCAATCACTCAAAATGGCGGGTAATTCGGTTAGTGGAAAAATTCCAAGTGAGATTTTTCATTTGGATCAATTACAAGAGCTTGATCTATCTTTTAACCGATTATCGGGAACTATTCCTTCACAAATTGGAAATTCTTCGAATTTGTCTAACTTAAATTTGAATGGTAATAGTCTTTCTGGTAAGATACCTATTGAAATCGGAAAGCTTTCGAATTTGCAAACTTTAGACCTTTCGATGAACGCGTTGTTTGGAGAAATTCCAGCTCAGATAGGTGATTGTTCGAATTTGTTGAATTTGAATTTGAGTAACAATCATTTGAATGGAACAATTCCTTTCCAAATTGGAAATCTTGGTTCATTACAAGACTTTTTGGATTTGAGTTACAATTCAATTTCTGGTTCAATTCCTGGTAATATCGGTAAGCTTTCGAGTTTGATAAGCTTAAATATCTCGAACAATAATTTATCGGGTAAAATTCCCGATCAAATTAGTGGAATGTTGAGTTTGTCAAGTCTTAATCTCTCTAACAATCATTTGGAGGGTAATGTTCCTAAAGATGGCATTTTCAAATTGAACTCTTCTAATTTACTTGATTTGAGCAATAATCAAGGGCTATGTGGTAATTTCAAAGGTTTGATACCTTGCAATGTTTCACTCATTGAACCAAATGATGATGGAAGTAACAAAAAAAAAGTTGTGATTCCAATTGTTGCTTCTTTAGGAGGTGCACTTTTTCTCTCATTGATAATTGTTGGCATAATTTTATTATGCTACAAGAGAAAATCAAGAACTACAAGAACAAGGTCTTTATTGGATACACCAAATCCATTTTCAATTTGGTATTTCAACGGAAGAGTTGTGTACGGTGACATAATCGAAGCTACTAACAATTTCAACGACAAGTATTGCATAGGCGAAGGAGCGTTCGGGAATGTTTACAAAGCGGAACTGAATGGTGGTCAAATATTCGCGGTGAAAAAGTTGAAATGTGATGAAGAGAATTTAGACAAAGAAAGTATAAAAACATTTGAAAGTGAAGTTGAAGCTATGACAGAAACAAGACATAGAAATATTGTGAAGCTTTATGGATTTTGTTGTGAAGGGATGCATACATTTCTTGTTTATGAGTATATGGATAGAGGAAGTTTAGCTGATATGTTGAATGATGATAAGAAAGCTTTAGAACTTGATTGGTTTAAAAGAGTTGAAATTGTTAAAGGTGTTGCAAGTGCTCTTTCTTATATGCATCATGATTGTTCACCAATTTTGATTCATAGAGATATATCAAGTAAGAATATTTTGTTATCAAAGGATCTTGAAGCTCATGTTTCAGATTTTGGTACTGCAAGGTTTCTTAAGCCAAATTCACCTATTTGGACTTCATTTGCTGGCACATATGGCTATGCTGCTCCAGAACTTGCATACACAATGGCAGTGACAGAGAAATGTGATGTATTCAGCTTTGGTGTTTTAGCATTTGAAATCCTAACAGGAAAACATCCTGGTGATCTTGTTTCTTACATACAAACATCTAATGATCAAAAGATAGATTTCAAAGAGATTTTAGACCCTCGCCTTCCTTCGCCTCCAAAGAACATTTTGAAAGAATTGGCATTGGTTGCAAATTTAGCTCTTTCTTGTTTACACACAAATCCTCAATCTAGACCAACCATGAGAAGCATTGCCCAGTTGTTGGAAATGGAAACTGCATTTAACACTTGA 2856 0.3466 MSNHNHNHKFSISSSLLVFLLLNLCQITTSLTQFEALLKWKQSLPPQPILDSWKINNSSSTQTPCSWRGITCDSKGSVTIINLAYTGLEGTLNHLNLSVFPNLLRLDLKTNNLTGVIPENIGVLSKLQFLDLSTNYLNGTLPLSIANLTQVYELDVSRNDVSGILDPRLFPDGTNKPSSRTGLIGIRNLLFQDTLLGGPLPIEIGNIKNLTILALDGNNFSGPIPSSLGKCKHLSILRLNENQFSGQIPRSLGKLTNLTDLRFFTNNLNGTVPQEFGNLSSLIVLHLAENNFIGELPPEICKSGKLVNFSAAYNSFTGPIPRSLRNCPSLYRVRMEYNELTGYADQDFGVYPNLTYIDFSNNRVEGGLSSKWGSCKNLQSLKMAGNSVSGKIPSEIFHLDQLQELDLSFNRLSGTIPSQIGNSSNLSNLNLNGNSLSGKIPIEIGKLSNLQTLDLSMNALFGEIPAQIGDCSNLLNLNLSNNHLNGTIPFQIGNLGSLQDFLDLSYNSISGSIPGNIGKLSSLISLNISNNNLSGKIPDQISGMLSLSSLNLSNNHLEGNVPKDGIFKLNSSNLLDLSNNQGLCGNFKGLIPCNVSLIEPNDDGSNKKKVVIPIVASLGGALFLSLIIVGIILLCYKRKSRTTRTRSLLDTPNPFSIWYFNGRVVYGDIIEATNNFNDKYCIGEGAFGNVYKAELNGGQIFAVKKLKCDEENLDKESIKTFESEVEAMTETRHRNIVKLYGFCCEGMHTFLVYEYMDRGSLADMLNDDKKALELDWFKRVEIVKGVASALSYMHHDCSPILIHRDISSKNILLSKDLEAHVSDFGTARFLKPNSPIWTSFAGTYGYAAPELAYTMAVTEKCDVFSFGVLAFEILTGKHPGDLVSYIQTSNDQKIDFKEILDPRLPSPPKNILKELALVANLALSCLHTNPQSRPTMRSIAQLLEMETAFNT 951
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g01028 951 Gene3D Ribonuclease Inhibitor 253 342 IPR032675 -
Trre7g01028 951 Gene3D Ribonuclease Inhibitor 343 439 IPR032675 -
Trre7g01028 951 ProSiteProfiles Protein kinase domain profile. 676 949 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre7g01028 951 SMART serkin_6 676 949 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre7g01028 951 Pfam Protein kinase domain 678 941 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre7g01028 951 SUPERFAMILY RNI-like 248 585 - -
Trre7g01028 951 ProSitePatterns Protein kinases ATP-binding region signature. 682 705 IPR017441 GO:0005524
Trre7g01028 951 ProSitePatterns Tyrosine protein kinases specific active-site signature. 801 813 IPR008266 GO:0004672|GO:0006468
Trre7g01028 951 FunFam Leucine-rich repeat receptor-like protein kinase TDR 278 595 - -
Trre7g01028 951 FunFam Nuclear pore complex protein NUP107 30 171 - -
Trre7g01028 951 Gene3D Transferase(Phosphotransferase) domain 1 756 950 - -
Trre7g01028 951 Gene3D Phosphorylase Kinase; domain 1 641 755 - -
Trre7g01028 951 SMART LRR_typ_2 124 148 IPR003591 -
Trre7g01028 951 SMART LRR_typ_2 544 569 IPR003591 -
Trre7g01028 951 SMART LRR_typ_2 399 423 IPR003591 -
Trre7g01028 951 SMART LRR_typ_2 447 471 IPR003591 -
Trre7g01028 951 SMART LRR_typ_2 279 303 IPR003591 -
Trre7g01028 951 SMART LRR_typ_2 520 543 IPR003591 -
Trre7g01028 951 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 177 272 - -
Trre7g01028 951 Gene3D Ribonuclease Inhibitor 31 176 IPR032675 -
Trre7g01028 951 Gene3D Ribonuclease Inhibitor 440 500 IPR032675 -
Trre7g01028 951 SUPERFAMILY L domain-like 60 262 - -
Trre7g01028 951 Pfam Leucine rich repeat 502 557 IPR001611 GO:0005515
Trre7g01028 951 Pfam Leucine rich repeat 401 460 IPR001611 GO:0005515
Trre7g01028 951 FunFam MDIS1-interacting receptor like kinase 2 756 949 - -
Trre7g01028 951 FunFam Leucine-rich repeat receptor protein kinase MSP1 638 755 - -
Trre7g01028 951 PRINTS Leucine-rich repeat signature 402 415 - -
Trre7g01028 951 PRINTS Leucine-rich repeat signature 447 460 - -
Trre7g01028 951 Gene3D Ribonuclease Inhibitor 177 252 IPR032675 -
Trre7g01028 951 Pfam Leucine rich repeat N-terminal domain 32 73 IPR013210 -
Trre7g01028 951 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 266 944 - -
Trre7g01028 951 SUPERFAMILY Protein kinase-like (PK-like) 650 945 IPR011009 -
Trre7g01028 951 Gene3D Ribonuclease Inhibitor 501 603 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g01028 Trre-Chr7 6840559 6843868 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g01028 16 849 Receptor kinase-like Gene Family AT4G08850 39.420 0.0 588
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Trre7g01028 Pkinase 3.1e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g01028 - - aprc:113866080 1417.52