Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g01024 ATGAAAATGAGTTGCAATGGGTGCCGCGCACTTCGCAAAGGATGTAGTCAAGATTGCATCATCAAGCCCTGCCTTGAGTGGATCAGTTCCCCTGAATCCCAAGGCAATGCCACCCTTTTCCTTGCCAAATTTTATGGTCGAACTGGCTTGCTCAACCTCCTTGCTAATGCTACCAATCAAAATTCTCAAGCTGTGTTCAAATCATTGTTGTATGAGGCTTCGGGTAGATTGGTGAATCCCACACATGGGGCACTAGGTTTATTTTGGACAGGACAATGGAACCGTTGTGAAGCTGCAGTTGAAGCCGTGCTGACTGGATCAAATATTAATGATGTTACAACTGTTGATGGACAAACATCATCATATACACTCATTGCTGAAAATCGTTTTATTCCAAGAACCTATGATATACGCCATGTGGCAAAACGTACTAACGTGGATATCAAAGAGAAAACTAATTTCAAGAGAGTTGCATCAACTTTCAAGCCCAAGCCACAAGTTGGTTTGGTAGACAATGATGCACTTTTGAGATCGATTTGGGAGAGTTGCAATGTGAAAACCGTTGAGGCTAATTCATCAATGATTGAGACAGAGCCGAATGAAACTGCTGAAACTCAAGTGAACTTGGAACTCACTCTTGGCTTCAGTTGCCAATCAAATAATGGCAAATAA 672 0.4211 MKMSCNGCRALRKGCSQDCIIKPCLEWISSPESQGNATLFLAKFYGRTGLLNLLANATNQNSQAVFKSLLYEASGRLVNPTHGALGLFWTGQWNRCEAAVEAVLTGSNINDVTTVDGQTSSYTLIAENRFIPRTYDIRHVAKRTNVDIKEKTNFKRVASTFKPKPQVGLVDNDALLRSIWESCNVKTVEANSSMIETEPNETAETQVNLELTLGFSCQSNNGK 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g01024 223 ProSiteProfiles LOB domain profile. 3 109 IPR004883 -
Trre7g01024 223 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 3 213 - -
Trre7g01024 223 Pfam Lateral organ boundaries (LOB) domain 4 104 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g01024 Trre-Chr7 6823738 6824818 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g01024 1 168 AS2 family AT1G68510 51.786 2.76e-57 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Trre7g01024 LOB 7.1e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g01024 - - mtr:25485496 308.531