Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g01017 ATGAAGCGTGCGAGAACCACAGGGGATTCTAGTTCTTCTAGGGTTTCAACATCTCTTGAAGCAGGAATCATCAAGAAGCTTCGGTTAGAGAATTTCATGTGTCATTCCAATCACGAAACCGAGTTCGGAAATCACGTTAATGTCATCACCGGACAGAATGGCAGCGGTAAAAGTGCAATACTTACTGCATTGTGTGTTGCATTTGGTTGTCGAGCTAAAGGGACTCAAAGAGCATCTACTTTGAAGGATTTCATCAAAACTGGTGCTAGTAATGCTGTCATCCATGTTGAAATTCAAAATGAAGGAGAGGATGCTTTCAAGCCTGAAATATATGGCGACGTCATCATTGTAGAACGTAGGATATCCGAATCCACAAGCTCTATTACATTGAAAGATTCTCAAGGAAAGAAAGTTTTCAGTCGGAAAGCAGATCTTCAGGAAATCATTGAACATTTCAATATTGATGTGGAGAATCCGTGCGTGATTATGAGTCAAGACAAAAGCAGAGAATTCCTGCACTCTGGGAATAACAAAGATAAATTTAAGTTCTTTTACAAGGCCACACTTCTTCAGCAAGTCAATGATCTCCTGGAAAGCATTTCCAGTGAAATAAATACTGCACGTGGAGTAGTTGAAGAATTAGACGCTGCAATAAGACCTATAGAGAAGGAGCTTAACGAGCTGCAGGTTAAAATTAAAACGATGGAACACGTTGAACAAATTTCCCTACAGGTTCAGCAGTTAAAAAAGAAACTTGCATGGTCATGGGTTTATGATGTGGACAAGAAACTCGAGGAACAAAATGTGAGGATTGAAAAGCTGAAGAGTCGGGTTCCTACCTGCCAAGCTAAGATAGATAAACAACTGCATCAGCTTGAAAAATTAAGCGAAAGTTATTCAACGAAGAAAGCAGAAATTGCAAGTATGATGACATCACAAGTTAAGCAAATGAAGGAAATTTTAAGCCGCTCTATGTCATCGGCAAAAAAAGAAGCATATGAACTTCAGCGAGAGTGCAAATGCAAAACTAACAACATACAGAAGTTGGTACAACAGCTCAAAAAGCTTGAACTACAAATGCAGGATATTCATGAGCAGCATGTGAAAAATACCCAGGCTGAAGAATCTGACATGGAGGAAAAACTGAAGGTGCTTCGAGATGAGGTTCATGATGCTAAATCCGAATTGGATAGATTGAAAGAAGAAGAGACTACGTTAATGAACAACAAAAATAGGCAAAAGGACGAAATCAGAATGATTGATGATAAGATCCGAGATCATGAAAAGAAGTATAATGAAATCATGCTTAATATTCGTAATATTAAACAACAACAAAGCAACAAGATCATGGCTTTTGGAGGAAATAAAGTGATTAATCTGTTACGTGTAATTGAACGATGTTATCAAAGGTTTAAGATGCCTCCCATTGGTCCAATTGGTGCTCATCTGAAGTTGCTTAATGGTAATAAATGGGCGGTTGCTGTTGAACATGCCATTGGGAGAATGCTCAATTCTTTTATAGTGACTGATCACAAGGATTTTCGTCTTTTGAAACAATGTGCGAATGAAGTAAACTATGGTCATCTTCAAATTATTATTTATGATTTTTCAACCCCAAGGTTGATGATACCACAGCACATGCTTCCTCATACAAACCATCCATCAGTTCTCTCTGTCTTACAATGCGAGAATCACACTGTGATGAATGTCTTAGTCGATCTGGGAAATGTTGAGAGACAAGTGCTTGTTAACGACTATAATACCGGGAAGGTTGTTGCCTTTGAAGAGAGGATCCAAAATCTGAAGGAGGTCTTCACTGTGGAAGGTTGTAAAATGTTTTCGCGAGGTCCAGTACAGACAACTCTTCCTCCAAATAAGAGTCAACGATATGGTCGTCTAAGCAGTTCTGTTGAAGATGCCATTGAGAAATTTAGTAATGATGCATCCAATGAACAAAAGGCCGCAAATGACTATAAATGGAATAAAAGAGATGCAGAGCTCAAGCTTGAGGATCTAGACAAGAAGATGAATTCTATAAAGAGGCTTTGTGTAAATGCTGGAAAAAGCTTTAATTCTAAGAAGCTGGCTTTGGAGGAGTTAACAAATCAACAAGCTGCTGAACGTAACTTGACACCTTTGTCCTCAGTTGATGAGATTGTTGAAGAAATTTCAGAAATAAACAAAAAAATAAAAGCAGAGCAGGTGTTGTTAGAAGGCCTTGAGCAGAGGAGGCATGAAGCAGTGGGAAAAGCAACTGATCTTGAAGTAAAATTTGACGAATTGTGTGAATCAGCGAATACTGAACTTGCTTCCCTTGAGAAAGCTGAGAGAGAACTTATGGAGATTGAAAGAGAAATAGATTCAGCAAATAAGGCAAAGGATCATTATGATGATGTCATGAAAACCAAGGTCCTACATGATATTAAGGAGGCGGAGGAACACTATCTGGAGCTTACAAAAAGGCGTGAGACGAATGTTGAGAAGGCTTCTGTAATTTGCTGTCAGAATGAACTTGATACGATAGGAGGTTACGATGGGCAAAGCCCAGAGCAAATCAGTGGCCAATTAGAAAGTCTAAATCGTCAACTTAAGCGTGAGAGCCAAAGATACTCCGAATCTATTGATGATCTGAGGATGCTATATAAAAAAAAAGAACGAAAGATTATAAAAAAGCAGCAAGTTTACAGAGGCCTTCGACAGAAATTGAATGCTTGCGAAAGTGCTTTAGAGTTTCGGATGAGGAAGTTTCGGACAAACGCAACTAATCTCAAGCATCAGCTTTCTTGGAAATTTAATGGCCATTTGAAAAAGAAGGGGATCAGTGGAGTTATCAAAGTTGATTATGAGCAGATGACCTTATCGATTGAGGTACAGATGCCCCAAGATGCATCAAACAGAGCTGTTCGAGACACAAGGGGGCTTTCAGGTGGAGAGCGATCTTTCTCAACTTTGTGCTTTGCATTAGCCCTTCATGAAATGACAGAGTCCCCGTTTAGAGCGATGGATGAATTTGATGTCTTTATGGACGCAGTAAGCAGAAAAATTAGTATGGACACTCTGATTGATTTTGCCGAGGCACAAGGATCCCAGTGGATATTGATCACCCCACATGATACTAGCTTGGTGAAGGCAGGGAATAGGGTAAAGAAGATGCAAATGGCAGCTCCCCGTTCTTGA 3177 0.3947 MKRARTTGDSSSSRVSTSLEAGIIKKLRLENFMCHSNHETEFGNHVNVITGQNGSGKSAILTALCVAFGCRAKGTQRASTLKDFIKTGASNAVIHVEIQNEGEDAFKPEIYGDVIIVERRISESTSSITLKDSQGKKVFSRKADLQEIIEHFNIDVENPCVIMSQDKSREFLHSGNNKDKFKFFYKATLLQQVNDLLESISSEINTARGVVEELDAAIRPIEKELNELQVKIKTMEHVEQISLQVQQLKKKLAWSWVYDVDKKLEEQNVRIEKLKSRVPTCQAKIDKQLHQLEKLSESYSTKKAEIASMMTSQVKQMKEILSRSMSSAKKEAYELQRECKCKTNNIQKLVQQLKKLELQMQDIHEQHVKNTQAEESDMEEKLKVLRDEVHDAKSELDRLKEEETTLMNNKNRQKDEIRMIDDKIRDHEKKYNEIMLNIRNIKQQQSNKIMAFGGNKVINLLRVIERCYQRFKMPPIGPIGAHLKLLNGNKWAVAVEHAIGRMLNSFIVTDHKDFRLLKQCANEVNYGHLQIIIYDFSTPRLMIPQHMLPHTNHPSVLSVLQCENHTVMNVLVDLGNVERQVLVNDYNTGKVVAFEERIQNLKEVFTVEGCKMFSRGPVQTTLPPNKSQRYGRLSSSVEDAIEKFSNDASNEQKAANDYKWNKRDAELKLEDLDKKMNSIKRLCVNAGKSFNSKKLALEELTNQQAAERNLTPLSSVDEIVEEISEINKKIKAEQVLLEGLEQRRHEAVGKATDLEVKFDELCESANTELASLEKAERELMEIEREIDSANKAKDHYDDVMKTKVLHDIKEAEEHYLELTKRRETNVEKASVICCQNELDTIGGYDGQSPEQISGQLESLNRQLKRESQRYSESIDDLRMLYKKKERKIIKKQQVYRGLRQKLNACESALEFRMRKFRTNATNLKHQLSWKFNGHLKKKGISGVIKVDYEQMTLSIEVQMPQDASNRAVRDTRGLSGGERSFSTLCFALALHEMTESPFRAMDEFDVFMDAVSRKISMDTLIDFAEAQGSQWILITPHDTSLVKAGNRVKKMQMAAPRS 1058
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g01017 1058 Coils Coil 655 682 - -
Trre7g01017 1058 Pfam RecF/RecN/SMC N terminal domain 24 1053 IPR003395 -
Trre7g01017 1058 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 24 1051 IPR027417 -
Trre7g01017 1058 Coils Coil 211 231 - -
Trre7g01017 1058 Coils Coil 723 757 - -
Trre7g01017 1058 SUPERFAMILY Smc hinge domain 458 598 IPR036277 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Trre7g01017 1058 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES 5,6 SMC5, SMC6 5 1057 - -
Trre7g01017 1058 Coils Coil 368 444 - -
Trre7g01017 1058 Gene3D - 774 1056 IPR027417 -
Trre7g01017 1058 Coils Coil 762 799 - -
Trre7g01017 1058 Gene3D - 23 222 IPR027417 -
Trre7g01017 1058 Coils Coil 856 880 - -
Trre7g01017 1058 Coils Coil 318 366 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g01017 Trre-Chr7 6729160 6747242 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g01017 21 1058 Structural Maintenance of Chromosomes family AT5G07660 56.731 0.0 1167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g01017 K22804 - gmx:100816916 1556.19