Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g01016 ATGGAGAAAAACAATGGCAAAACCTGTGGGATTTGTGGTAAGTGGTTCTCCAGCGGGAAAGCCATGGGAGGCCACATGAGATCTCACGTGGTCAAATTGCCGGTTCATCCAAAGCTTGAAATTAATAATCAAGCATTACAAAATTCAGCCGATTCAACCCAGCATCCAATTCAATCTGCTTCCTCACTCACTTGTCATCCCGAAAAAGAACAAATACAGAATTTTCAATCAATGAAACGCAGCTTCTCTGCCTTATCTCTAAACACAGACAGCGAAAATGAATCTGAGTCCAAGCCAAAAAACCCAACCTTCAAACGATCCAAATTGCACTACAAACATAATGCAGCGGTCGATACAAAAGTTCTTCCAGATCAAACAAGTTCAATATGTGAAAATGAAACTCCTGAAGATGTTTCAATATGTGAAAATGAAACTCTTGAAGGTGCTTGGGTGGTGTGGGGTTTTTACAAAGACGCACAGAAAAGGGAAGCAGTCAAGGCACAAAAAATAAAGGAAATCTACGAAATGAACGCAAAAGACAATGAAGGCAATAGTGATGACTCGCCTGTTCAAGCTCACTTGCGAGCCAATTCCAAGTGTGGGAGGTGCGGAAAAGTATTTCGATCTTATCACGCTCTTGGTGGGCACAAAGTATACTGCAAAAGTGACAACAGTGGCAATTATATAGATCAGAAACCTTTTCAGTGCCCATATTGCGACAGGGTGTTCAAGTCTGCTCAAGCGCTCGGTGGACACAAGAGGATACACCTTTCCAGTGCTAATGGATTTCGAGGTGTGTGA 801 0.4232 MEKNNGKTCGICGKWFSSGKAMGGHMRSHVVKLPVHPKLEINNQALQNSADSTQHPIQSASSLTCHPEKEQIQNFQSMKRSFSALSLNTDSENESESKPKNPTFKRSKLHYKHNAAVDTKVLPDQTSSICENETPEDVSICENETLEGAWVVWGFYKDAQKREAVKAQKIKEIYEMNAKDNEGNSDDSPVQAHLRANSKCGRCGKVFRSYHALGGHKVYCKSDNSGNYIDQKPFQCPYCDRVFKSAQALGGHKRIHLSSANGFRGV 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g01016 266 MobiDBLite consensus disorder prediction 87 108 - -
Trre7g01016 266 SMART c2h2final6 234 256 IPR013087 -
Trre7g01016 266 SMART c2h2final6 7 29 IPR013087 -
Trre7g01016 266 ProSitePatterns Zinc finger C2H2 type domain signature. 236 256 IPR013087 -
Trre7g01016 266 SUPERFAMILY beta-beta-alpha zinc fingers 199 256 IPR036236 -
Trre7g01016 266 Pfam C2H2-type zinc finger 200 220 - -
Trre7g01016 266 Pfam C2H2-type zinc finger 234 258 - -
Trre7g01016 266 Pfam C2H2-type zinc finger 9 29 - -
Trre7g01016 266 ProSiteProfiles Zinc finger C2H2 type domain profile. 234 261 IPR013087 -
Trre7g01016 266 ProSitePatterns Zinc finger C2H2 type domain signature. 9 29 IPR013087 -
Trre7g01016 266 ProSiteProfiles Zinc finger C2H2 type domain profile. 7 34 IPR013087 -
Trre7g01016 266 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 1 260 IPR044303 GO:0006355
Trre7g01016 266 Gene3D Classic Zinc Finger 197 256 - -
Trre7g01016 266 SUPERFAMILY beta-beta-alpha zinc fingers 8 34 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g01016 Trre-Chr7 6725513 6726313 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g01016 9 266 C2H2 Transcription Factor Family AT2G45120 27.682 3.44e-19 83.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre7g01016 zf-C2H2_6 4.3e-08 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g01016 - - tpra:123923308 332.028