Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g01015 ATGGAGAAGAACATTGGTAAAGCTTGTGGCATTTGTGGCAAATGGTTTCCTAGTGCGAAATCCATTGGAGGGCACATGAGATCACACCTTGTCCTATTGCCGATTCCTCCAAAGTTTGAAGTTAACAATCAGGTAATAGACGATCCAACCCATCATCCAAGTCAATCTTCTTCTCCACCGGATTGTCCTAGTCCGGAAAAAGCTGCTCAAACTCTGATTATGATGTCCAAAGAAATAGTGGAAGATGACTTGCTTGTTCAAGCTAGGTTCAACTGTGATAAGTGCGGAAAAATATTCCGATCTTATCATGCTCTAGGTGGACACAAAGCAAAACATAAAAAAACTAATCTTGACTTATTGGCTGACACAGTGACTACTCTTGGGAGATCAGAATTTAAAGACTAA 405 0.4049 MEKNIGKACGICGKWFPSAKSIGGHMRSHLVLLPIPPKFEVNNQVIDDPTHHPSQSSSPPDCPSPEKAAQTLIMMSKEIVEDDLLVQARFNCDKCGKIFRSYHALGGHKAKHKKTNLDLLADTVTTLGRSEFKD 134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g01015 134 Gene3D Classic Zinc Finger 8 112 - -
Trre7g01015 134 MobiDBLite consensus disorder prediction 42 66 - -
Trre7g01015 134 ProSiteProfiles Zinc finger C2H2 type domain profile. 90 117 IPR013087 -
Trre7g01015 134 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 88 118 IPR044303 GO:0006355
Trre7g01015 134 Pfam C2H2-type zinc finger 9 29 - -
Trre7g01015 134 Pfam C2H2-type zinc finger 89 114 - -
Trre7g01015 134 ProSitePatterns Zinc finger C2H2 type domain signature. 92 112 IPR013087 -
Trre7g01015 134 ProSitePatterns Zinc finger C2H2 type domain signature. 9 29 IPR013087 -
Trre7g01015 134 ProSiteProfiles Zinc finger C2H2 type domain profile. 7 34 IPR013087 -
Trre7g01015 134 SUPERFAMILY beta-beta-alpha zinc fingers 8 112 IPR036236 -
Trre7g01015 134 SMART c2h2final6 7 29 IPR013087 -
Trre7g01015 134 SMART c2h2final6 90 112 IPR013087 -
Trre7g01015 134 MobiDBLite consensus disorder prediction 47 64 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g01015 Trre-Chr7 6721810 6722214 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g01015 43 114 C2H2 Transcription Factor Family AT2G45120 35.484 6.37e-11 56.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre7g01015 zf-C2H2_6 6.5e-09 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g01015 - - cam:101511854 73.1738