Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g01014 ATGGAGAAGAACAATGGCAAAGCTTGTGGGATTTGTGGCAAATGGTTACCTAGTGCGAAATCCATTGGAGGCCACATGAGATCACACCTTATCCTATTGCCGATTTCTCCAAAGTTTGAAGCAAACAATCAAGTAAAACACAATTCAACCCATCATTCAAATCAATGTTCTTCCCCACCGGATTGTCTTAGTCCGGAAAAAGCTGCTCAGACTCTGATTATGATGTCCAAAGAAATAGTGAAAAATGACTCATTTGGTCAAGTTAAGTTCGAATGTGATAAGTGCGGAAAAATGTTCCGATCTTATCAAGCTCTAGGTGGGCACAAAGCAAAACATAGAAAAACTAATCTGGACTTATTGGCTGACACAGTGAATACTCTTGGAAGATCGGAATTTAAAGACTAA 405 0.3926 MEKNNGKACGICGKWLPSAKSIGGHMRSHLILLPISPKFEANNQVKHNSTHHSNQCSSPPDCLSPEKAAQTLIMMSKEIVKNDSFGQVKFECDKCGKMFRSYQALGGHKAKHRKTNLDLLADTVNTLGRSEFKD 134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g01014 134 Gene3D Classic Zinc Finger 8 112 - -
Trre7g01014 134 SMART c2h2final6 90 112 IPR013087 -
Trre7g01014 134 SMART c2h2final6 7 29 IPR013087 -
Trre7g01014 134 ProSiteProfiles Zinc finger C2H2 type domain profile. 90 117 IPR013087 -
Trre7g01014 134 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 8 114 IPR044653 GO:0003700
Trre7g01014 134 ProSitePatterns Zinc finger C2H2 type domain signature. 92 112 IPR013087 -
Trre7g01014 134 ProSitePatterns Zinc finger C2H2 type domain signature. 9 29 IPR013087 -
Trre7g01014 134 Pfam C2H2-type zinc finger 90 114 - -
Trre7g01014 134 Pfam C2H2-type zinc finger 9 30 - -
Trre7g01014 134 SUPERFAMILY beta-beta-alpha zinc fingers 8 112 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g01014 Trre-Chr7 6720259 6720663 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g01014 6 113 C2H2 Transcription Factor Family AT2G17180 34.259 6.61e-09 50.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre7g01014 zf-C2H2_6 1.3e-11 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g01014 - - mtr:112420782 84.3445