Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g00995 ATGGCTCGTGGAAAGGTTCAGCTGAAGCGAATTGAGAACCCGGTCCATAGACAAGTTACTTTTTGTAAGCGCCGAGCAGGGCTTCTGAAGAAGGCTAAGGAGCTCTCTGTGCTTTGCGATGCTGAAATTGGCCTTGTCATTTTCTCCGCTCATGGAAAGCTCTATGAACTCGCCACCAAAGGAAGCATGCAAGGGCTTATAGAGAAGTACTTAAAGTTCACACATGGGACTCAACCTGAAGCTATCTATGAACCACGTCCTCTTGATGCTAAAGAGGAAGCCAATGTGATAAAACAAGAGATCGAAACAATGCAAAAGGGCCTCAGGTATTTGTTTGGAGGAGGATTAGGCACAATGGCATTGGATGAATTACAAGTTCTAGAGAAGAATCTTGAAATCTGGATGTATCATGTTCGCTCAATGAAGATGAACATTATGTCGGAAGAAATTCAAGCTTTGAGAGATAAGGAGGGAACACTAAAGGCGGCAAATAAATATCTCCACGATTTGGTGTTGGAGAATACTTCCGTCACTAACTTTGTTCCATTAATTGATACCTCGTACCCACTAATTATACAAGATGGGATTTTTCAGCTCTAG 600 0.425 MARGKVQLKRIENPVHRQVTFCKRRAGLLKKAKELSVLCDAEIGLVIFSAHGKLYELATKGSMQGLIEKYLKFTHGTQPEAIYEPRPLDAKEEANVIKQEIETMQKGLRYLFGGGLGTMALDELQVLEKNLEIWMYHVRSMKMNIMSEEIQALRDKEGTLKAANKYLHDLVLENTSVTNFVPLIDTSYPLIIQDGIFQL 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g00995 199 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Trre7g00995 199 Pfam K-box region 91 169 IPR002487 GO:0003700|GO:0005634|GO:0006355
Trre7g00995 199 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Trre7g00995 199 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Trre7g00995 199 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Trre7g00995 199 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Trre7g00995 199 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 56 IPR002100 GO:0003677|GO:0046983
Trre7g00995 199 SUPERFAMILY SRF-like 1 78 IPR036879 GO:0003677|GO:0046983
Trre7g00995 199 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Trre7g00995 199 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Trre7g00995 199 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 146 - -
Trre7g00995 199 Gene3D - 15 77 IPR036879 GO:0003677|GO:0046983
Trre7g00995 199 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g00995 Trre-Chr7 6595875 6603546 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g00995 1 199 MADS-box Gene Family AT1G71692 58.768 9.18e-76 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Trre7g00995 K-box 2.1e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g00995 - - mtr:25491856 315.079