Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g00994 ATGAATACTTTTTCTCATGTTCCCCCTGGTTTTAGGTTCCATCCCACAGATGAGGAACTTGTTGATTATTACCTTAGGAAGAAAATTGCTTCAAGAAAGATTGACCTTGATGTCATAAAAGATGTTGATCTTTACAAAATTGAACCATGGGATCTTCAAGAGCTTTGCAGAATAGGAACAGAAGAACAAAATGAATGGTATTTTTTTAGCCATAAAGATAAGAAGTATCCAACTGGGACAAGAACAAATAGAGCAACTGCAGCTGGATTTTGGAAAGCAACAGGAAGAGACAAAGCAATCTATAGTAAGCATGATCTTATAGGAATGAGGAAAACCTTAGTGTTTTATAAAGGTAGAGCTCCAAATGGACAAAAATCAGATTGGATTATGCATGAGTATCGCCTTGAAACAGATGAAAATGGCACACCGCAGGAAGAAGGATGGGTTGTATGTAGAGTCTTCAAAAAGAGAGTAACAACAACTATGCGCAAAATGAACGAGCATGACTCTCCTTGTTGGTATGATGACCAAGTTTCTTTTATGCAAGACATGGAATCACCAAATCAAACCTCTCAATCAAATTTGATTTACCAACAACTTCCATATCCTTGCAAAAAAGAGCTAGATAATTTACCATACCAAAACTTGCCTCGTGAACATTTTCTTAATCTACCACTTTTAGAGAGTCCAAAACTTCTTCAACCATCTTCAAATATAACCTCTAACCAAATGGTGACAACATATGGTACTATAGATCATGCAAATTCTTTGTTTCCTTCACCATCAATGCTACTACAAGAAGAACATATCATAAACCCTAATCAACAAAACTTTCATGCTATATATGGAAACAATAATTCAAATATTGAACAAGGTGTTGTTGATGAACAAGTTACTGATTGGAGAGTTCTTGACAAATTTGTTGCTTCACAACTTAGTCAAGATGCATCTAAAGACAATAACACAAGCAATATCTTTCATGGCAATGCTCAATTGAGAAATTTGGAGAAACAAGAAATGGTGCCTCATGAAAATGCCTCAACATCAAACTCAAGTTGTCCAATTGATTTGTGGAAATAG 1080 0.3528 MNTFSHVPPGFRFHPTDEELVDYYLRKKIASRKIDLDVIKDVDLYKIEPWDLQELCRIGTEEQNEWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKAIYSKHDLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLETDENGTPQEEGWVVCRVFKKRVTTTMRKMNEHDSPCWYDDQVSFMQDMESPNQTSQSNLIYQQLPYPCKKELDNLPYQNLPREHFLNLPLLESPKLLQPSSNITSNQMVTTYGTIDHANSLFPSPSMLLQEEHIINPNQQNFHAIYGNNNSNIEQGVVDEQVTDWRVLDKFVASQLSQDASKDNNTSNIFHGNAQLRNLEKQEMVPHENASTSNSSCPIDLWK 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g00994 359 FunFam NAC domain-containing protein 16 160 - -
Trre7g00994 359 SUPERFAMILY NAC domain 5 156 IPR036093 GO:0003677|GO:0006355
Trre7g00994 359 Gene3D NAC domain 16 160 IPR036093 GO:0003677|GO:0006355
Trre7g00994 359 ProSiteProfiles NAC domain profile. 7 156 IPR003441 GO:0003677|GO:0006355
Trre7g00994 359 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 6 272 - -
Trre7g00994 359 MobiDBLite consensus disorder prediction 340 359 - -
Trre7g00994 359 Pfam No apical meristem (NAM) protein 8 135 IPR003441 GO:0003677|GO:0006355
Trre7g00994 359 MobiDBLite consensus disorder prediction 341 359 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g00994 Trre-Chr7 6587540 6591408 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g00994 1 359 NAC Transcription Factor Family AT1G12260 57.027 8.57e-134 384
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Trre7g00994 NAM 3.7e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g00994 - - gmx:100815845 547.74