Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g00993 ATGCGAAACATCGCACGTGAGTTCGGACAAAACAGTTGGCTCACCAACAAGAGGAAAAAATCCGTGTCACGTGATTGTTTAAAACTCTATGATAACACAGTTTTCCATCTCAATCGTACATTTTTAGACTTGCACGTCAAAAAAAGATGTTCATCATTCGACGCACAAACATGGCTGAGCACTGCTTATACCAACATCCAAACATGTCAAAATGGAGCATTGGAATTAAACATTCCAAAATTCGTCGTGCCAATTATGAAAGCAAACATGACGGAGATCATAAGCAATGGTTTATTCTTCAATTGGGAATTCGTTAAACGTGACGGCCTTGTTCACTACACCAATGATGTTACCGAAGAGGCATTTCCGAGATGGTTTTCGGTTCGAGAGAGGAAACTATTGGAATCTTCTAGAGTTATTAAAGCTCATCTTGTTGTCGCCAAAGATGGTTCGGGGCATTTTAAGAAAGTTCAAGATGCTATAAATGCGGCCGGAAGGAGAAAATTTAAGACAAGATTTGTTATTCATGTGAAGAGAGGTGTTTATAGAGAGAATATTGTAGTTGGGAAGATGAATGATAATATTATGTTGGTTGGTGATGGGAGTAGAATTACTATTATTACAAGTAATAGAAATGTTCAAGCTGGTTTTACTACCTATAGTTCTGCCACTGCAGGAATTGATGGTCTTCACTTCATTGCACGTGATATAACTTTTGAAAATACGGCGGGACCGCGCCGGGGTCAAGCGGTGGCACTTCGATCGGCCTCTGATCTTTCTGTTTTCTACCGCTGTTCTTTCAAAGGCTATCAAGACACCCTCATGGTTCACGCACAACGTCAATTTTATAGAGAATGTTACATTTATGGTACCGTTGACTTCATCTTCGGCAATGCAGCAGTAGTTTTCCAAAATTGCATAATTCTTGTAAGAAGACCATTAAATGGTCAAGGAAACATGATCACGGCCCAAGGTCGAGACGACCCGTTTCAAAACACTGGAATATCAATTCATAATTCTCAGATTAGGGCCGCTCCCGACTTCAAGCCGGTTGTCGCGAAATTCAATACCTTTATGGGCAGGCCTTGGCAAAGATACTCTAGAGTTGTGGTCATGAAATCATTCATAGATAATTTGGTGAGCCCAATGGGTTGGTCTCCATGGGGAGGTACTAACTTTGCACAAAGTACACTATTTTATGGAGAGTATAAGAACTTTGGGCCGGGCTCATCAACAAGAAACAGAGTAAGATGGCCCGGTTATCATGTTTTGAACAGCCCAGCCCAAGCATCGCAATTTACTGTTGCTAACCTCCTTGCTGGTGCCACGTGGTTACCATCCACTGGTGTACCATTCACTTCTGGCCTTTAA 1371 0.4158 MRNIAREFGQNSWLTNKRKKSVSRDCLKLYDNTVFHLNRTFLDLHVKKRCSSFDAQTWLSTAYTNIQTCQNGALELNIPKFVVPIMKANMTEIISNGLFFNWEFVKRDGLVHYTNDVTEEAFPRWFSVRERKLLESSRVIKAHLVVAKDGSGHFKKVQDAINAAGRRKFKTRFVIHVKRGVYRENIVVGKMNDNIMLVGDGSRITIITSNRNVQAGFTTYSSATAGIDGLHFIARDITFENTAGPRRGQAVALRSASDLSVFYRCSFKGYQDTLMVHAQRQFYRECYIYGTVDFIFGNAAVVFQNCIILVRRPLNGQGNMITAQGRDDPFQNTGISIHNSQIRAAPDFKPVVAKFNTFMGRPWQRYSRVVVMKSFIDNLVSPMGWSPWGGTNFAQSTLFYGEYKNFGPGSSTRNRVRWPGYHVLNSPAQASQFTVANLLAGATWLPSTGVPFTSGL 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g00993 456 Gene3D - 137 456 IPR012334 -
Trre7g00993 456 CDD PMEI-like_3 15 101 - -
Trre7g00993 456 FunFam Pectinesterase 137 456 - -
Trre7g00993 456 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 14 101 IPR035513 -
Trre7g00993 456 SMART PMEI_2 4 100 IPR006501 GO:0004857
Trre7g00993 456 Pfam Plant invertase/pectin methylesterase inhibitor 19 98 IPR006501 GO:0004857
Trre7g00993 456 ProSitePatterns Pectinesterase signature 2. 288 297 IPR033131 -
Trre7g00993 456 Pfam Pectinesterase 144 441 IPR000070 GO:0030599|GO:0042545
Trre7g00993 456 SUPERFAMILY Pectin lyase-like 139 455 IPR011050 -
Trre7g00993 456 Gene3D Invertase/pectin methylesterase inhibitor family protein 3 102 IPR035513 -
Trre7g00993 456 PANTHER PECTINESTERASE 16 446 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g00993 Trre-Chr7 6572860 6574679 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g00993 15 456 Carbohydrate Esterase AT3G47400 61.333 0.0 565
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g00993 K01051 - gmx:100807908 733.406