Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g00968 ATGGTTGTCAACGAAAGACCAACTAAAAGAATGAAACGAAGAGTCACTGCCGATCTTTATGATTTTCTAACTTTCCCTCCCGCCGGCGAAAACTCCACCGCTGTTCCTTTTCGTACCGATGTTCATCGGTTTGTCTCTGAACATGCTCGTGTTACTTTTCCTCCTTCTCTTTTTTCGTCTCTGATGACGTGGCAGATCCTGTTCCGTATTGGTGATTTTGGTGATGGTTCTGATCTTTCGACTGCTATGGTTGCTCTTGACATTGTTGAAGAGGATGTTACTCAGTCTCGTAGTTCGGTTTATTGTGACCAGTGCCGAGTTGTTGGATGGAGTGCTCATCCTGTATGTCGAAAGCGATATCACTTCATAATAAGGTCTGCAAGTGATTCAATTGAAGCATACCAAAGACCCTGTTCTAAGTGTGAAACTCCCGTCCCCTTATCTGAAGCAAGGTGTAAGGTGTGCAACTTTGACATCTCCATTGATGATCTTGAGGATTATGTGTATCATCAAATAGAAGAGAACAATCATCTTCTGCATGGAGTTATCCATTCCAATGGTTATGGTCACTTGCTTACTCTTAATGGAAGAGAGGGTGGCTCGATGCTTCTCTCTGGATCTGATATCATGGGATTCTGGGATAGGCTATGTGCTGCAATTTCTGTTAGGAAGGTTAGTGTGATGGATTTGTCCAAGAAATTTGGTCTGGATTATCGTCTGCTTCATTCAATTGCGAAAGGGCATTCATGGTATGGCAATTGGGGTTATGAATTTGGGACTGGCAGCTATGCTCTTACCAAAGATGCTTACAATAAGGCTGTTGATAGCTTGTCCAATATGCCCTTGTCTTCGTTTTTATTCCAGGACCGAGGACCTCCACACCGTGTGCAATCCGTTATTTCTCTTTACCAGTCTTTGGCAGAAGCTGAACTTCTCACAATGAAAGACTTCTTCTCCTTTTTGTTGGAATTGGTTCATAAATTTCGTAAGCCCAGGAGTGCAAAGACTGCTAAACATCATGAATATGCTGGTCCCTGTAATTTATTATGCGCATGGACCAGAAATGATGTTGAAAATGTTCAACAAGCTTTGATCAAGGTATTGCTCGTATCAGGTGCTTGTAATGAGGCTAAATGGGTGACAAGGCAAACTCTCAAGGGGGCAGTAAGTAGGCTTGGATCTCCAGAGCTAATAGACTACTGTCTTAAGCATTTGCAAGGGAAAATAGCTGCAAATGGATTGGTAGTCTGTTCGCGATGCAATCCCACATCCAGTGCTATCGAATTCAGATTGGGACATTTGACTAATGGATTTAGCTCAAATTCAACCTTTCCTTCAGAAGAGCAAGTGATTTCTGATTTGACATTCCTATTTAATTCCATTATTCACCCTGAAAAGATGATCAAATACAGACCTAAGATTATTAGGAAAACCGTGAGTGATTCAGCCAGAAAGCTTCTTGACTGTAAGCAGTTTATGAAGGTTTACAAAATTGAACAAGTGTCCACAGAACTGCCCTCAGCAATTAAGCTCTGGTGTCATGTGGAGCTTTCTGATCAACCTAAAGATGACCAGCCATCACCACCGCCAGAGCTGATTGTCTTGCCGTTGGATGCCACAGTTGCTGATCTCAAGAATGAAGCCACTAAAGCTTTCCAATTGGTATATGCAATGTACAAAAAGTTTGAAGCTCAAGAACTTGTAGGATTTGGTTCAATCAATGATTTGCTAACCGTAAAATTCCTTCTTGGCACAAGTGGATCAGTTGAAATTCTAGGAAAAAGCCCAGCCAAACATGGCTTAAGCCGATTCCGAAAGGAGCGTGGAACTGAAGAATGGAAAGTTGATTGCACATGTGGTGCTAAGGATGATGATGGAGAAAAAATGTTAGCATGTGATACCTGTGGCATCTGGCAGCATACGAGATGTGCTGGAATTGGTAGTTCTGATGATGGCATGCCTTCCAAGTTTGTATGTATGAAGTGTGTCAAGGCTTGTAAATTGAACGCATCCTGCAGAAATGAAAATGCAGCTGCTTGTAATATAAATGTAAATTTTGGTGTACGATGA 2070 0.4188 MVVNERPTKRMKRRVTADLYDFLTFPPAGENSTAVPFRTDVHRFVSEHARVTFPPSLFSSLMTWQILFRIGDFGDGSDLSTAMVALDIVEEDVTQSRSSVYCDQCRVVGWSAHPVCRKRYHFIIRSASDSIEAYQRPCSKCETPVPLSEARCKVCNFDISIDDLEDYVYHQIEENNHLLHGVIHSNGYGHLLTLNGREGGSMLLSGSDIMGFWDRLCAAISVRKVSVMDLSKKFGLDYRLLHSIAKGHSWYGNWGYEFGTGSYALTKDAYNKAVDSLSNMPLSSFLFQDRGPPHRVQSVISLYQSLAEAELLTMKDFFSFLLELVHKFRKPRSAKTAKHHEYAGPCNLLCAWTRNDVENVQQALIKVLLVSGACNEAKWVTRQTLKGAVSRLGSPELIDYCLKHLQGKIAANGLVVCSRCNPTSSAIEFRLGHLTNGFSSNSTFPSEEQVISDLTFLFNSIIHPEKMIKYRPKIIRKTVSDSARKLLDCKQFMKVYKIEQVSTELPSAIKLWCHVELSDQPKDDQPSPPPELIVLPLDATVADLKNEATKAFQLVYAMYKKFEAQELVGFGSINDLLTVKFLLGTSGSVEILGKSPAKHGLSRFRKERGTEEWKVDCTCGAKDDDGEKMLACDTCGIWQHTRCAGIGSSDDGMPSKFVCMKCVKACKLNASCRNENAAACNINVNFGVR 689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g00968 689 ProSitePatterns Zinc finger PHD-type signature. 617 662 IPR019786 -
Trre7g00968 689 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 12 667 - -
Trre7g00968 689 SMART PHD_3 616 663 IPR001965 -
Trre7g00968 689 SUPERFAMILY FYVE/PHD zinc finger 610 666 IPR011011 -
Trre7g00968 689 Pfam PHD-finger 617 663 IPR019787 -
Trre7g00968 689 CDD PHD_MMD1_like 616 662 - -
Trre7g00968 689 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 602 668 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g00968 Trre-Chr7 6406862 6409680 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g00968 84 662 PHD Transcription Factor Family AT5G22260 29.133 6.90e-83 274
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Trre7g00968 PHD 1.5e-09 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g00968 K26271 - gmx:100780558 1039.64