Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g00956 ATGGGTTGTTGGAGATTCTCACTCTCTTCAAATTCCACTACTAATGTTCCCTTTAAACGAATCTACCGTGGTCCCTTTATCAAAGACATTGACGGGGGAAATTCCCACGTCTGCGGTCTGATTAAAGGGACCAAAGGTTTTCGCCCTGAGTGTTGGCAATGGAAAGATTACGATTCAACTTTCGGAAAGAACCCGAACATGAACATGTCAAGAATCGCGGTGGGGGAGAATTTTGCATGTGGGCTATATGAAATTGAAAAAGGGAATAATGTTACTTGCATAGGAAGTAATAAATATGTTGTTGGAAATGAACCAAAGAATGGTGGAGATTATTCTTTAATTGAAGCTGGTTCAAATCATGTTTGTGCTATCACAAATGATGGTAGTTTGGATTGTTGGGGTGATATGGTTGGTGAGAAACCAAAAGGAAGATTCATTTCATTGGCTTTAGGAGAGAATAGAAGTTGTGCACTTAGGTATGATGGATTAGTTTATTGTTGGGGTTTGAATAATTTCACCTTGCCATTGAAGTTAAAAGGGACTTATTTTGAGTCAATTGTGGCTAAAAAAAGTGTTTTTTGTGGTGTTTTGACTTCTAATTACTCTTTATTTTGTTGGGGTAATGAAGTTTTTGAGTCAAAAAATGATGCATTCAAGGTGTTTGATAATGTGCTTCCTGGACCTTGTAAGAATCAATGTCCTTGTGGACCTTTACCAGATTCTGCTAAACTTTGTGTCTCACCAGCCATCATTTGTAAAACTTGTTTACCAACTTTTGAAATTCCATCATCACCGCCGTCGAATCCTCCGTTGGGAAGTCCAGGAAATTCATCGAAAAGTGGTACTTGGAGCAACAAAATGGTGGCGTTTCTAGTAATCGGATGTGTTGGTTGTAGTACCTTGTTACTAGCCTTATCTTTCTTCTTTTACAAATACTGCAGAGGGACAATATGCAGATCGAAATCTAGAGTTCATGACTCTGGAAGATTAGACGATCTTGATCATGATACTGAATTGGAGCCTCGAGCTAAGCCTGCAGTTCTCGAGAAGAGGTTAAGCCATGTAATTAGCAAGGGAAATGGAGGTAGCCTTTTGGAGGAATTTTCACTTCAAACACTAATTGAAGCCACTGGAAATTTCTCCGAAGGGAACAAAATCGGTGTTGGAAGCTTCGGTTCGGTGTACCATGCTAAACTTGAAGATGGAAAAGAAGTCGCTATAAAAAGAGCTGAAATGTCAACAAATTCACCTTCATTTGGAAATGTTAGTGTCACCAAAAGACAAGAAGACAATGACAGTGCTTTTGTGAATGAACTTGAATCTTTGTCAAGACTCCACCACAAAAACTTGGTAAAATTACTCGGTTTCTACGAAGACAAAAACGAAAGAATCCTAGTATACGAATACATGAACAACGGAAGCTTAAACGATCATCTTCACAAGTTTCAAACTTCAACTATTATGTCATGGAGCAGTCGTATAAAAGTTGCATTAGACGCAGCTAGAGGTATAGAATATTTACACAAATACGCCATGCCACCAATTATTCACCGTGACATTAAAACGTCAAACATTTTATTAGATTCAAAATGTGTCGCTAAAGTAGCCGATTTTGGGTTATCGTTAATGGGTCCGGAAGATGAAGAGTCACATATTTCACTACTAGCAGCCGGAACCGTTGGTTACATGGATCCAGAATACTATAGACTGCAACATTTGACAACAAAAAGTGACGTGTATAGCTTCGGCGTTGTTTTGTTAGAACTTTTAAGTAGCTATAAAGCTATACATAAAAATGAAAATGGAGTGCCAAGAAATGTAGTTGATTTTGTGGTACCCTTTATTGTTCAAGATGAGATTCATAGAATTTTAGATCCAAAATTGCCACCACCAACACCATTTGAGATTGAAGGTGTGGCTTTTGTAGGTTATTTAGCTTGTGATTGTGTTCGTTTAGAAGGTAGAGATAGACCAAGTATGAGTCATGTTGTGAATAGTTTAGAGAAAGCACTAGAGGCTTGTTTGGCACAACCAATAATTGGTGAGTCCAATAGGACCACTACTAGCACTATTTCTAATGAGTGA 2085 0.3818 MGCWRFSLSSNSTTNVPFKRIYRGPFIKDIDGGNSHVCGLIKGTKGFRPECWQWKDYDSTFGKNPNMNMSRIAVGENFACGLYEIEKGNNVTCIGSNKYVVGNEPKNGGDYSLIEAGSNHVCAITNDGSLDCWGDMVGEKPKGRFISLALGENRSCALRYDGLVYCWGLNNFTLPLKLKGTYFESIVAKKSVFCGVLTSNYSLFCWGNEVFESKNDAFKVFDNVLPGPCKNQCPCGPLPDSAKLCVSPAIICKTCLPTFEIPSSPPSNPPLGSPGNSSKSGTWSNKMVAFLVIGCVGCSTLLLALSFFFYKYCRGTICRSKSRVHDSGRLDDLDHDTELEPRAKPAVLEKRLSHVISKGNGGSLLEEFSLQTLIEATGNFSEGNKIGVGSFGSVYHAKLEDGKEVAIKRAEMSTNSPSFGNVSVTKRQEDNDSAFVNELESLSRLHHKNLVKLLGFYEDKNERILVYEYMNNGSLNDHLHKFQTSTIMSWSSRIKVALDAARGIEYLHKYAMPPIIHRDIKTSNILLDSKCVAKVADFGLSLMGPEDEESHISLLAAGTVGYMDPEYYRLQHLTTKSDVYSFGVVLLELLSSYKAIHKNENGVPRNVVDFVVPFIVQDEIHRILDPKLPPPTPFEIEGVAFVGYLACDCVRLEGRDRPSMSHVVNSLEKALEACLAQPIIGESNRTTTSTISNE 694
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g00956 694 Gene3D Transferase(Phosphotransferase) domain 1 470 680 - -
Trre7g00956 694 Pfam Protein kinase domain 381 665 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre7g00956 694 ProSitePatterns Protein kinases ATP-binding region signature. 386 408 IPR017441 GO:0005524
Trre7g00956 694 ProSitePatterns Serine/Threonine protein kinases active-site signature. 515 527 IPR008271 GO:0004672|GO:0006468
Trre7g00956 694 SMART serkin_6 380 671 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre7g00956 694 ProSiteProfiles Protein kinase domain profile. 380 671 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre7g00956 694 SUPERFAMILY RCC1/BLIP-II 18 210 IPR009091 -
Trre7g00956 694 Pfam Regulator of chromosome condensation (RCC1) repeat 114 135 - -
Trre7g00956 694 Pfam Regulator of chromosome condensation (RCC1) repeat 146 172 - -
Trre7g00956 694 CDD STKc_IRAK 386 669 - -
Trre7g00956 694 Gene3D Phosphorylase Kinase; domain 1 356 469 - -
Trre7g00956 694 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN CCR4 106 677 IPR044815 GO:0004674
Trre7g00956 694 SUPERFAMILY Protein kinase-like (PK-like) 363 667 IPR011009 -
Trre7g00956 694 Gene3D - 3 226 IPR009091 -
Trre7g00956 694 FunFam PTI1-like tyrosine-protein kinase 3 470 677 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g00956 Trre-Chr7 6323260 6325344 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g00956 3 688 Receptor kinase-like Gene Family AT5G47850 50.718 0.0 634
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Trre7g00956 Pkinase 2.6e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g00956 - - pvu:PHAVU_011G003100g 895.575