Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g00955 ATGGAGGCATGCACCCAAGAGTCTGTTGATTCGACAGAAGATTTTAATAACTATAGCCCCATCTCTGTGATGATTTCTGACCCACATATGTTCGATTGTTGCAATTGTTTTCAATCCTTGACCATTCCCATCTTTCAGTGTATTAATGGCCATATTGTTTGCTCAATCTGCTATAATAAGCTTCAGCAAATATGTCTCAAATGCTCAAATTGCTTAATACGTTGTAGAGCCTTTGAGAATCTATTGAATTCTATCCAAATGTTTTGCCCAAACAAAAAATATGGCTGCAAGGAGAGGATAAGTTTCACTAGAGATATGGAGCATGTAGAAGAATGCATCCATGTGCCATGTTATTGTCCCCTTTCAAGTTGTAACTATGTTGGCTCATCAGGAGTGTTGTCCAACCATTTCAGCCATCAACATGAGGATTCTCGAATCAAATTTTCTTATGGTCAGTCCTTCATTGTCTCCTTCAAGTCTAATGATAAAACAATGGTGCTGCAAGAGGAAACTGATCGCAAACTATATATTCTCAATAATAGACCTGTGAATTTGGGAAATGCAGTCAATATTAGCTGCATTGGTCCTTCCTATTCTGACCAACACTATCATTGTGATATTTTGGCTAGGTCCCAAATATGCACTCTAAAGTTAGAGTCTTCTGTGAAGAATGTTCAACGGGTTAATTTAGCAACTCTTTCATCAAACTTTCTACTGATTCCATTTGAACATTTTGGTTCTTTTGATCTTTTAAACCTAGAAATTTGCATAAGCCCCAAGTTGCGAATATTCATAAGGACCACTGATGGAAATGCATTCCCCATGATGGCTGAGAGTTCAGACACAATATCAGATTTGAAGACAATGATTTTTGACAGAGAAAAAATCCCAGTGGACCAACAACATTTGATCTTTGCTGGTAGGCTACTAGATGACTTCCGTACCATCAGCGATTACAACTTCAAAGGGGCGATAACCATCCACCTAGTCCGGCAACCCATAATATCATGA 1011 0.3828 MEACTQESVDSTEDFNNYSPISVMISDPHMFDCCNCFQSLTIPIFQCINGHIVCSICYNKLQQICLKCSNCLIRCRAFENLLNSIQMFCPNKKYGCKERISFTRDMEHVEECIHVPCYCPLSSCNYVGSSGVLSNHFSHQHEDSRIKFSYGQSFIVSFKSNDKTMVLQEETDRKLYILNNRPVNLGNAVNISCIGPSYSDQHYHCDILARSQICTLKLESSVKNVQRVNLATLSSNFLLIPFEHFGSFDLLNLEICISPKLRIFIRTTDGNAFPMMAESSDTISDLKTMIFDREKIPVDQQHLIFAGRLLDDFRTISDYNFKGAITIHLVRQPIIS 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g00955 336 Pfam Ubiquitin family 263 331 IPR000626 GO:0005515
Trre7g00955 336 Pfam Seven in absentia protein family 73 163 IPR018121 GO:0005737|GO:0006511|GO:0007275
Trre7g00955 336 ProSitePatterns Ubiquitin domain signature. 287 312 IPR019954 -
Trre7g00955 336 PRINTS Ubiquitin signature 292 312 IPR019956 -
Trre7g00955 336 PRINTS Ubiquitin signature 313 334 IPR019956 -
Trre7g00955 336 PRINTS Ubiquitin signature 271 291 IPR019956 -
Trre7g00955 336 ProSiteProfiles Ubiquitin domain profile. 261 330 IPR000626 GO:0005515
Trre7g00955 336 SUPERFAMILY TRAF domain-like 84 257 - -
Trre7g00955 336 Gene3D - 257 334 - -
Trre7g00955 336 SMART ubq_7 261 332 IPR000626 GO:0005515
Trre7g00955 336 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 79 137 IPR013083 -
Trre7g00955 336 ProSiteProfiles Zinc finger SIAH-type profile. 84 142 IPR013010 GO:0008270
Trre7g00955 336 SUPERFAMILY Ubiquitin-like 236 331 IPR029071 -
Trre7g00955 336 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 11 258 IPR044286 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g00955 Trre-Chr7 6319526 6321501 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g00955 261 330 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 50.000 3.96e-18 77.8