Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g00954 ATGGAGGCATGCACCCAAGAGTCTGTTGATTCGACAGAAGATTTTAATAACTATAGCCCCATCTCTGTGATGATTTCTGACCCACATATGTTCGATTGTTGCAATTGTTTTCAATCCTTGACCATTCCCATCTTTCAGTGTATTAATGGCCATATTGTTTGCTCAATCTGCTATAATAAGCTTCAGCAAATATGTCTCAAATGCTCAAATTGCTTAATACGTTGTAGAGCCTTTGAGAATCTATTGAATTCTATCCAAATGTTTTGCCCAAACAAAAAATATGGCTGCAAGGAGAGGATAAGTTTCACTAGAGATATGGAGCATGTAGAAGAATGCATCCATGTGCCATGTTATTGTCCCCTTTCAAGTTGTAACTATGTTGGCTCATCAGGAGTGTTGTCCAACCATTTCAGCCATCAACATGAGGATTCTCGAATCAAATTTTCTTATGGTCAGTCCTTCATTGTCTCCTTCAAGTCTAATGATAAAACAATGGTGCTGCAAGAGGAAACTGATCGCAAACTATATATTCTCAATAATAGACCTGTGAATTTGGGAAATGCAGTCAATATTAGCTGCATTGGTCCTTCCTATTCTGACCAACACTATCATTGTGATATTTTGGCTAGGTCCCAAATATGCACTCTAAAGTTAGAGTCTTCTGTGAAGAATGTTCAACGGGTTAATTTAGCAACTCTTTCATCAAACTTTCTACTGATTCCATTTGAACATTTTGGTTCTTTTGATCTTTTAAACCTAGAAATTTGCATAAGCCCCAAGGTTGCGGTGCAAATGCAAATATTCTTAAAGACCTTTGGTAGACAGATGATCCCCTTGAGGGTGGAGAGTTCAGACACGATAGCCGATGTGAAGGTGAAAATTTTAAATAAGTTAGGGCATCGACCAGAAGAACAACATATGTTATTTGCTGGTAAGAGACTAGATGATGACCACACCATTGCCTATTACAACATCCAAGATAATTCTATCATCAACTTGACCCCTAACTTACATGAGGGGCAGCAGTTGCGAATATTCATAAGGACCACTGATGGAAATGCATTCCCCATGATGGCTGAGAGTTCAGACACAATATCAGATTTGAAGACAATGATTTTTGACAGAGAAAAAATCCCAGTGGACCAACAACATTTGATCTTTGCTGGTAGGCTACTAGATGACTTCCGTACCATCAGCGATTACAACTTCAAAGGGGCGATAACCATCCACCTAGTCCGGCAACCCATAATATCATGA 1257 0.389 MEACTQESVDSTEDFNNYSPISVMISDPHMFDCCNCFQSLTIPIFQCINGHIVCSICYNKLQQICLKCSNCLIRCRAFENLLNSIQMFCPNKKYGCKERISFTRDMEHVEECIHVPCYCPLSSCNYVGSSGVLSNHFSHQHEDSRIKFSYGQSFIVSFKSNDKTMVLQEETDRKLYILNNRPVNLGNAVNISCIGPSYSDQHYHCDILARSQICTLKLESSVKNVQRVNLATLSSNFLLIPFEHFGSFDLLNLEICISPKVAVQMQIFLKTFGRQMIPLRVESSDTIADVKVKILNKLGHRPEEQHMLFAGKRLDDDHTIAYYNIQDNSIINLTPNLHEGQQLRIFIRTTDGNAFPMMAESSDTISDLKTMIFDREKIPVDQQHLIFAGRLLDDFRTISDYNFKGAITIHLVRQPIIS 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g00954 418 ProSiteProfiles Ubiquitin domain profile. 265 340 IPR000626 GO:0005515
Trre7g00954 418 SUPERFAMILY Ubiquitin-like 262 340 IPR029071 -
Trre7g00954 418 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 80 137 IPR013083 -
Trre7g00954 418 ProSitePatterns Ubiquitin domain signature. 369 394 IPR019954 -
Trre7g00954 418 Gene3D - 260 341 - -
Trre7g00954 418 Gene3D - 342 416 - -
Trre7g00954 418 Pfam Seven in absentia protein family 73 163 IPR018121 GO:0005737|GO:0006511|GO:0007275
Trre7g00954 418 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 11 258 IPR044286 -
Trre7g00954 418 Pfam Ubiquitin family 267 333 IPR000626 GO:0005515
Trre7g00954 418 Pfam Ubiquitin family 345 413 IPR000626 GO:0005515
Trre7g00954 418 PRINTS Ubiquitin signature 317 338 IPR019956 -
Trre7g00954 418 PRINTS Ubiquitin signature 275 295 IPR019956 -
Trre7g00954 418 PRINTS Ubiquitin signature 296 316 IPR019956 -
Trre7g00954 418 SMART ubq_7 265 336 IPR000626 GO:0005515
Trre7g00954 418 SMART ubq_7 343 414 IPR000626 GO:0005515
Trre7g00954 418 ProSiteProfiles Zinc finger SIAH-type profile. 84 142 IPR013010 GO:0008270
Trre7g00954 418 SUPERFAMILY TRAF domain-like 84 257 - -
Trre7g00954 418 SUPERFAMILY Ubiquitin-like 339 413 IPR029071 -
Trre7g00954 418 ProSiteProfiles Ubiquitin domain profile. 343 412 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g00954 Trre-Chr7 6319526 6321501 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g00954 343 412 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 50.000 1.03e-17 77.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g00954 K04506 - mtr:11432566 447.588