Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g00951 ATGGCCCAACAGTCATCCAGGCTTCAGCGCTTGCTTACTCTCTTGGACACTGGCTCAACCCAAGCAACAAGGTTGACTGCAGCTCGGCAGATAGGGGAGATTGCAAAATCGCACCCTCAAGACTTGACCAGTCTTCTTAAGAAGGTTTCTCAATATCTGCGCAGTAAAAAATGGGATACAAGAGTTGCAGCTGCCCATGCAATTGGATCTATTGCTGAGAATGTTAAGCACATGAGCTTGAATGAACTTATTGGTTCTGTTGTAACAAAAATGTCTGAGAGTGGGATATCTTGTAGTGTCGATGATCTGTGTGCATGGCCTTATTTACAAGCAAAAATTACAGGAAGCTCATTTAGAAGCTTTGATATGAATAAGGTGCTTGAATTTGGAGCTTTGTTAGCATCAGGAGGACAGGAATACGATATCGGAAGTGATAATATAAAGAACCCAAAGGAGCGTTTGGTTCGCCAAAAGCAAAATCTCCGACGCCGTTTAGGTTTGGATGTCTGCGAACAATTTATGGATATCAATGATGTAATAAGAGATGAAGATCTTTTGGCACACAAATCAGATTCACATCTCAATGGGGCAGATCATAAAGTTTTTACATCTTGTTCTGTACATAACATCCAGAAAATGGTTGCAAATATGGTTCCCAATGCCAAATCAAAGTGGCCGAGTGCTAGAGAACGTAATCTTTTAAAACGCAAAGCAAAAAATAACTCAAAAGACCAATCGAAGAGCTGGTGTGAAGATGGAACAGAGGCTTCAGGCACTCAAAATTTGACTTCAAAAGGCACATGTCCCGATTCAGTAAATTTTAGTAAGCCATTCACGCAAGGTAATCACGACGAAGATGGATTTGAGCATGATGAAGATGGACAATGGCCTTTCAGTACTTTTGTTGAGCAACTTATTATTGATATGTTCGATCCTGTTTGGGAAGTACGGCATGGTAGCGTGATGGCATTGAGAGAGATTTTAACACATCAAGGTGCTTCTGCTGGAGTGTTGAAACACGAGCCACACTTGGACAGGACCCCATTTGTAGAATTAGAAGACAAAAATATAACAAATATGTTGAAGAGAGAGAGGGATATTGATTTAAATATGCAAGTTTCAGCAGATGAGTGTGTCTCGAACTTGAAGAGGCCAAAACTTGAAGATGTATCATTGTCAACCTCTATGGATAGCGTGATGACTTGCAGCAATGATGGTGATATTGAAAACAGCATTAGTTCTGAAACCCAGGGGTGCAATTTACCTGTGGACTATGGGAATGGGAAATTTGATGGTAGTTCTATTGACATGAATCTGGAAACCCACTCTAATGATTTACATGATGCACACAAGGAACCTGCTAATATAGCAGAGCAGAAGGGTTATTCTGATGGCAAAATGATCCCCTCTGGAAAACCTAATGTTCTGAGAAATCTTCCTCAGAATTGTGAGCTGATGAACTTGGTTAAAGTAACTAGAAGTTCCTGGCTTCGGAACTGTGAATTTCTTCATGACTGTGTCATACGCTTTTTGTGTGTATTGTCACTTGACCGCTTTGGAGATTATGTATCTGATCAGGTTGTTGCGCCGGTGCGTGAAACCTGTGCACAGGCATTAGGTGCTGCATTTAAGTATATGCATGCTGCACTAGTAAATGAAACATTGAACATATTGTTGAAAATGCAGTGTAGTCCAGAATGGGAGATTCGTCATGGCAGTCTTCTGGGTATCAAATATTTGGTTGCTGTGCGGCAGGAGATGCTTTCCGATTTGCTTGGACGTGTTCTTCCTGCATGTAAGTCTGGGTTGGAGGACCCAGATGATGATGTCCGAGCAGTTGCTGCCGATGCTTTAATACCAGCTGCAGCTGCAATTGTTGCTTTGCAGGGTCAAACACTGCATTCAATTGTGATGCTGTTGTGGGATATATTGCTTGATTTGGATGATTTAAGTCCGTCCACTAGCAGTGTAATGAATCTGCTTGCAGAAATCTATTCTCATGAAGAGATGGTCCCAAAGATGTATAAAGTTTTTAAATTAGAAGACAAGGAAATAGTAAATGGAGCTGGTGGTTGTGGTGATAGTGGAGAAGAAAATCCTTTTGTACTTTCAACTCTGGCACCGCGTTTGTGGCCCTTTATGAGGCATAGCATCACATCTGTCCGTTATTCAGCAATACGAACTCTGGAGCGGCTACTCGAAGCTGGATATAAGAGAAGCATGTCTGAGCTCTCTAGTGCTTCATTTTGGCCCTCTTCTATATTTGGAGATACCCTTAGAATTGTCTTTCAAAATTTACTATTGGAAACAAATGATGATATTTTGCAATGTTCTGAGAGAGTTTGGAGTCTCCTTGTTCAGTGTTCGGTGGAGGACCTGGAGACAGCTGCAAGATCTTACATGACTTCCTGGATTGAACTTGCCTCTACACCTTTTGGTTCTGCATTAGATCCCTCAAAGATGTTTTGGCCCGTTGCCTTTCCACGAAAAAGTCAATTTAGAGCAGCTAAAATGAGAGCTGTGAGGACTGAAAATGAATATGGTGGAGATCTTGGCCTTGAATCTACAATATCAACTATTCCACATGATAGAAATGGAGATGTTCCCATGAATTCCATTAAGATAGTTGTTGGTGCTGAAGTTGACACATCTGTAACTCGTACCCGGGTAGTTACAGCAACTGCTTTGGGAATTTTCGCCTCTAAGCTTCCAGAGGGTTCTTTACAAAATACAATTGATCCACTTTGGAGTTCGTTAACCTCTTTTTCTGGTGTCCAACGCCAGGTTGCATCTATGGTACTTATTTCTTGGTTCAAGGAGATTAGGACCAGGAATTTGTCTGGATGCCTCAATGGTATCCCTGCTTCCCTCAAAGATTGGCTGCTGGACTTGCTATCATGTTCTGACCCTGCATTCCCCACAAAAGGTTCACTTCTTCCTTATGCTGAGCTTTCAAGAACTTATTCTAAGATGCGAAGTGAGGCAGCTCAATTGCTAAATGCAGTCAAATCTTCCGGTATGTTTAGCGAGTTATTGACAACAACCAATATTGAGTTGGATAACTTGAGTGTAGATGATGCCATTGGTTTTGCATCGAAAATTCCAGCATTGTGTAATGATAGTTCGGCAAATGAATCTTTGAGAAAGAACACTATGGATGATATTGAATCCTCAAAACAGAGGCTCTTGACAACCTCTGGCTATTTGAAATGTGTTCAGAGTAATTTGCATGTTACAGTTACATCTGCAGTTGCAGCTGCAGTTGTGTGGATGTCTGAGTTTCCTACACGGCTCACCCCCATCATTTTGCCTTTGATGGCTTCAATCAAACGCGAGCAGGAGGAAATACTGCAAACTAAGTCAGCTGAGGCTCTCGCTGAACTAATATATCACTGTGTTTCACGTAGACCTTGCCCCAATGATAAACTAATCAAGAATATTTGTAGTTTGACTTGCATGGATCCCTCTGAGACCCCACAAGCTAAATCCATTTGTTCTATGGAGAGTATTGATGACCAAGGTCTGCTATCTTTCAGAACTCCTGTGAATAAACAGAAGTCAAAGGTGCATGTTCTGACTGGTGAGGACCGATCAAAGGCAGAGGGATTTATAAGTAGACGTGGATCTGAGCTAGCACTGAAGCTTCTGTGTGAGAAGTTCGGTGTTTTGCTATTTGACAAAGTTCCTAAGCTGTGGGATTGCCTTACTGAGGTTCTTAAGCCAAGCTCCTATGAATCTCTACTTGCCGCTACTGAAAAGCATGATACTGTTGTAATTGAGTCTGTTGGTGATCCTCAGACCTTGATTAACAATATCCAGGTTGTGCGATCTGTTTCTCCCTTGTTAAATGAGGAGTTGAAGCCAAAACTTTTGACGCTTCTCCCATCTGTTTTTAAATGTGTTAAGCACTCTCATGTCGCCGTTAGAGTAGCTGCTTCACGCTGTATCACTTCCATGGCCCAATCAATGATTGTGAAAGTTATGGGAGCTGTGGTTGAAAATGCTATCCCTATGTTGGAAGATGCCTCGTCAGTTCATGCTCGGCAAGGAGCTGGCATGTTGATTAGCTTTCTTGTTCAGGGGCTTGGTGTAGAATTGGTCGCTTATGCTCCTCTGCTGGTTGTTCCCCTTCTACGATGCATGAGTGATTCTGATCAGTCTGTCAGACAGAGTGTGACCCATAGCTTTGCTGCTCTTGTACCTTTACTTCCTTTAGCACGTGGTGTTCCACAACCAATTGGATTAGGGGAAGGTATATCTAGAAATGCAGAAGATTTACATTTTCTGGAGCAACTGCTTGACAACTCTCATATTGAAGATTACAAGTTGTGCACTGAATTGAAAGTAACATTGAGAAGGTATCAGCAGGAAGGCATAAATTGGTTAGCTTTTTTGAAACGTTTCAAACTTCATGGAATTTTATGTGATGACATGGGGCTTGGTAAGACACTTCAAGCCTCAGCAATTGTGGCCTCTGAAATAGTTGAGCGTCAAACTCAAATCGGCAATGAGGATCTTCTTCCATCTTTAATTATTTGCCCGTCAACACTAGTTGGGCATTGGGCTTTTGAGATAGAAAAGTATATTGATGTTTCGGTCATATCTAGTCTTCAGTACGTTGGTTCTGCTCAGGATCGAATGCTTCTTCGAGATAGTTTTTGCAAACATAATGTCATTATAACATCATATGATGTTGTCCGTAAAGATGTTGATTATTTGGGACAGCTGCTGTGGAATTACTGCATTTTAGATGAAGGACATATAATAAAAAATGCCAAGTCGAAAGTTACTCTTGCTGTAAAGCAGTTGAAAGCCCAACACCGCTTGATATTGAGTGGGACACCAATACAGAATAACATAATGGACTTGTGGTCCCTTTTTGATTTTCTGATGCCTGGATTTCTTGGAACAGATAGACAGTTCCAAGGCACATATGGGAAACCACTTTTAGCTGCAAGAGATCCAAAGTGCTCTGCTAAGGATGCTGAAGCTGGAGCACTTGCTATGGAAGCATTGCATAAGCAGGTCATGCCTTTCCTCCTTCGGAGAACAAAGGATGAAGTCTTGTCCGATCTGCCGGAGAAAATAATTCAAGACAGATACTGTGATTTGAGCTCTGTGCAACTTAAACTTTACGAACAGTTTTCTGGGTCTCGTGCGAAACAAGAGATGTCATCTATTGTAACAACGAATGAGTCGGCTGCAGCAGAAGGAAGTAGCAGTTCTACTAAAGCGTCTTCACATGTTTTCCAGGCACTCCAATACTTGCTGAAACTTTGTAGTCATCCATTGCTTGTACTTGGTGGGAAGATTCCAGATTCACTTTCTACCAGCCTCTCAGAATTGTTCCCTGCTGGCTCCGATATCATTTCAGAACTTCACAAACTCCACCACTCCCCAAAATTAGTTGCTCTTCATGAGATTCTTGAAGAGTGTGGAATTGGAGTTGACGCTTCAGGTTCCGAGGCTGGTGTTGGCATTGGACAGCATAGGGTCTTAATATTTGCTCAACATAAGGCGTTCTTGGATATAATTGAAAAAGATTTGTTTCAGTCACACATGAAAAATGTCACATATTTGAGGCTGGATGGATCAGTTGAGACCGAGAAGCGATTTGAAATTGTAAAAGCTTTCAATTCAGATCCTACCATTGATGTCTTATTGCTCACGACTCATGTGGGCGGGCTTGGTTTGAACCTAACATCTGCAGATACGCTTGTTTTTGTGGAGCATGACTGGAATCCTATGCGCGATCTTCAGGCTATGGATAGAGCGCACAGGTTAGGTCAGAAAAAGGTAGTTAATGTTCACCGTCTGATAATGCGTGGTACATTGGAAGAGAAAGTTATGAGTCTACAACGGTTTAAAGTGTCAGTTGCTAATGCTGTCATTAATGCGGAAAATGCTAGTTTGAAAACAATGAATACAGATCAGTTGCTTGATTTATTTGCATCAGCAGAAATCCCCAAGAAGGGCTCTTCTGTTGCGAAGAGTTCAGAAGACAACGCTGATGGAGGCATAGGCACTGGAAAGGGATTGAAAGCAATACTTGGGGGATTGGAGGATCTATGGGATCAATCACAATATACAGAAGAGTACAATTTGAGTCAATTTTTGGCGAAGCTTAATGGTTAA 6135 0.4173 MAQQSSRLQRLLTLLDTGSTQATRLTAARQIGEIAKSHPQDLTSLLKKVSQYLRSKKWDTRVAAAHAIGSIAENVKHMSLNELIGSVVTKMSESGISCSVDDLCAWPYLQAKITGSSFRSFDMNKVLEFGALLASGGQEYDIGSDNIKNPKERLVRQKQNLRRRLGLDVCEQFMDINDVIRDEDLLAHKSDSHLNGADHKVFTSCSVHNIQKMVANMVPNAKSKWPSARERNLLKRKAKNNSKDQSKSWCEDGTEASGTQNLTSKGTCPDSVNFSKPFTQGNHDEDGFEHDEDGQWPFSTFVEQLIIDMFDPVWEVRHGSVMALREILTHQGASAGVLKHEPHLDRTPFVELEDKNITNMLKRERDIDLNMQVSADECVSNLKRPKLEDVSLSTSMDSVMTCSNDGDIENSISSETQGCNLPVDYGNGKFDGSSIDMNLETHSNDLHDAHKEPANIAEQKGYSDGKMIPSGKPNVLRNLPQNCELMNLVKVTRSSWLRNCEFLHDCVIRFLCVLSLDRFGDYVSDQVVAPVRETCAQALGAAFKYMHAALVNETLNILLKMQCSPEWEIRHGSLLGIKYLVAVRQEMLSDLLGRVLPACKSGLEDPDDDVRAVAADALIPAAAAIVALQGQTLHSIVMLLWDILLDLDDLSPSTSSVMNLLAEIYSHEEMVPKMYKVFKLEDKEIVNGAGGCGDSGEENPFVLSTLAPRLWPFMRHSITSVRYSAIRTLERLLEAGYKRSMSELSSASFWPSSIFGDTLRIVFQNLLLETNDDILQCSERVWSLLVQCSVEDLETAARSYMTSWIELASTPFGSALDPSKMFWPVAFPRKSQFRAAKMRAVRTENEYGGDLGLESTISTIPHDRNGDVPMNSIKIVVGAEVDTSVTRTRVVTATALGIFASKLPEGSLQNTIDPLWSSLTSFSGVQRQVASMVLISWFKEIRTRNLSGCLNGIPASLKDWLLDLLSCSDPAFPTKGSLLPYAELSRTYSKMRSEAAQLLNAVKSSGMFSELLTTTNIELDNLSVDDAIGFASKIPALCNDSSANESLRKNTMDDIESSKQRLLTTSGYLKCVQSNLHVTVTSAVAAAVVWMSEFPTRLTPIILPLMASIKREQEEILQTKSAEALAELIYHCVSRRPCPNDKLIKNICSLTCMDPSETPQAKSICSMESIDDQGLLSFRTPVNKQKSKVHVLTGEDRSKAEGFISRRGSELALKLLCEKFGVLLFDKVPKLWDCLTEVLKPSSYESLLAATEKHDTVVIESVGDPQTLINNIQVVRSVSPLLNEELKPKLLTLLPSVFKCVKHSHVAVRVAASRCITSMAQSMIVKVMGAVVENAIPMLEDASSVHARQGAGMLISFLVQGLGVELVAYAPLLVVPLLRCMSDSDQSVRQSVTHSFAALVPLLPLARGVPQPIGLGEGISRNAEDLHFLEQLLDNSHIEDYKLCTELKVTLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASEIVERQTQIGNEDLLPSLIICPSTLVGHWAFEIEKYIDVSVISSLQYVGSAQDRMLLRDSFCKHNVIITSYDVVRKDVDYLGQLLWNYCILDEGHIIKNAKSKVTLAVKQLKAQHRLILSGTPIQNNIMDLWSLFDFLMPGFLGTDRQFQGTYGKPLLAARDPKCSAKDAEAGALAMEALHKQVMPFLLRRTKDEVLSDLPEKIIQDRYCDLSSVQLKLYEQFSGSRAKQEMSSIVTTNESAAAEGSSSSTKASSHVFQALQYLLKLCSHPLLVLGGKIPDSLSTSLSELFPAGSDIISELHKLHHSPKLVALHEILEECGIGVDASGSEAGVGIGQHRVLIFAQHKAFLDIIEKDLFQSHMKNVTYLRLDGSVETEKRFEIVKAFNSDPTIDVLLLTTHVGGLGLNLTSADTLVFVEHDWNPMRDLQAMDRAHRLGQKKVVNVHRLIMRGTLEEKVMSLQRFKVSVANAVINAENASLKTMNTDQLLDLFASAEIPKKGSSVAKSSEDNADGGIGTGKGLKAILGGLEDLWDQSQYTEEYNLSQFLAKLNG 2044
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g00951 2044 MobiDBLite consensus disorder prediction 251 280 - -
Trre7g00951 2044 MobiDBLite consensus disorder prediction 234 250 - -
Trre7g00951 2044 FunFam TATA-binding protein-associated factor 172 1693 2009 - -
Trre7g00951 2044 Gene3D - 1693 2005 IPR027417 -
Trre7g00951 2044 CDD SF2_C_SNF 1798 1940 - -
Trre7g00951 2044 FunFam TATA-binding protein-associated factor BTAF1 1 96 - -
Trre7g00951 2044 SMART ultradead3 1447 1641 IPR014001 -
Trre7g00951 2044 CDD DEXHc_Mot1 1451 1683 IPR044078 GO:0005524
Trre7g00951 2044 Pfam Helicase conserved C-terminal domain 1829 1929 IPR001650 -
Trre7g00951 2044 Gene3D - 1270 1411 IPR011989 -
Trre7g00951 2044 Gene3D - 506 689 IPR011989 -
Trre7g00951 2044 FunFam TATA-binding protein-associated factor BTAF1 507 687 - -
Trre7g00951 2044 Pfam SNF2-related domain 1469 1765 IPR000330 GO:0005524|GO:0140658
Trre7g00951 2044 Gene3D - 4 94 IPR011989 -
Trre7g00951 2044 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1430 1683 IPR027417 -
Trre7g00951 2044 PANTHER TATA-BINDING PROTEIN-ASSOCIATED FACTOR 172 4 2043 IPR044972 GO:0003677|GO:0016887|GO:0017025
Trre7g00951 2044 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1819 1979 IPR001650 -
Trre7g00951 2044 FunFam TATA-binding protein-associated factor BTAF1 1198 1409 - -
Trre7g00951 2044 FunFam B-TFIID TATA-box-binding protein-associated factor 1 1421 1682 - -
Trre7g00951 2044 MobiDBLite consensus disorder prediction 234 292 - -
Trre7g00951 2044 SMART helicmild6 1843 1929 IPR001650 -
Trre7g00951 2044 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1463 1633 IPR014001 -
Trre7g00951 2044 SUPERFAMILY ARM repeat 6 1487 IPR016024 -
Trre7g00951 2044 Pfam Domain of unknown function (DUF3535) 781 1234 IPR022707 -
Trre7g00951 2044 Gene3D - 1424 1682 IPR038718 -
Trre7g00951 2044 Coils Coil 981 1001 - -
Trre7g00951 2044 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1684 1984 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g00951 Trre-Chr7 6286489 6304462 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g00951 1446 1984 RAD5 or RAD16-like Gene Family AT1G02670 26.466 9.14e-39 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Trre7g00951 DUF3535 1.1e-106 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g00951 K15192 - gmx:100777977 3427.11